Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 5.3e-148 527.7 276 100.0
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 2.6e-94 349.4 210 87.6
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 9.0e-71 271.2 182 72.5
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.5e-70 270.4 231 58.4
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 4.5e-70 268.9 207 66.2
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 2.4e-68 263.1 214 63.1
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.7e-67 259.6 214 62.1
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 4.6e-67 258.8 191 68.1
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 1.3e-66 257.3 188 67.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.5e-65 253.1 226 58.4
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 4.3e-65 252.3 177 67.2
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 8.1e-64 248.1 207 59.9
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 9.3e-60 234.6 179 62.6
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.1e-59 233.4 179 62.0
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.8e-58 230.3 213 52.1
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 8.7e-58 228.0 226 50.4
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 4.3e-57 225.7 226 49.6
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 5.6e-57 225.3 177 59.3
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 2.8e-56 223.0 170 61.2
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 3.7e-56 222.6 235 48.5
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 4.8e-56 222.2 176 58.0
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 8.2e-56 221.5 204 55.4
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 8.2e-56 221.5 179 61.5
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 1.8e-55 220.3 163 62.6
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.8e-55 220.3 176 55.7
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 3.1e-55 219.5 176 56.8
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 4.0e-55 219.2 179 60.9
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 5.3e-55 218.8 179 59.8
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 6.9e-55 218.4 179 59.2
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 9.0e-55 218.0 240 47.9
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.5e-54 217.2 176 57.4
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 1.5e-54 217.2 177 58.2
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.5e-54 217.2 176 56.2
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.5e-54 217.2 219 49.8
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.4e-54 216.1 223 49.3
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 5.8e-54 215.3 178 55.6
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 5.8e-54 215.3 178 55.6
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 7.6e-54 214.9 178 60.1
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 1.3e-53 214.2 191 57.1
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.3e-53 214.2 176 55.7
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 1.3e-53 214.2 176 55.7
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.7e-53 213.8 199 52.8
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 2.2e-53 213.4 162 64.8
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 3.8e-53 212.6 182 55.5
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 4.9e-53 212.2 182 57.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 6.5e-53 211.8 208 53.4
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 8.4e-53 211.5 145 69.0
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 8.4e-53 211.5 176 55.7
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 2.5e-52 209.9 165 62.4
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 4.2e-52 209.1 176 54.0
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 9.3e-52 208.0 220 50.0
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 1.2e-51 207.6 178 55.1
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 2.7e-51 206.5 166 62.0
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 6.0e-51 205.3 182 56.0
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 1.3e-50 204.1 179 55.3
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 3.0e-50 203.0 177 53.1
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 6.7e-50 201.8 176 53.4
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 1.5e-49 200.7 160 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 5.7e-49 198.7 162 59.3
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 1.6e-48 197.2 188 48.9
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 2.2e-48 196.8 216 48.1
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 8.2e-48 194.9 223 46.2
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 2.4e-47 193.4 159 59.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 2.4e-47 193.4 177 53.7
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 5.3e-47 192.2 229 44.1
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 6.9e-47 191.8 230 46.1
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 9.0e-47 191.4 219 49.3
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 2.0e-46 190.3 134 64.2
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.6e-46 189.9 213 46.5
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 3.8e-45 186.0 272 40.8
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 3.8e-45 186.0 214 46.3
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 5.0e-45 185.7 191 47.6
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 6.5e-45 185.3 230 43.9
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.1e-44 184.5 178 52.8
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 1.1e-44 184.5 177 50.3
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.4e-44 184.1 206 48.1
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 3.2e-44 183.0 225 43.6
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 2.7e-43 179.9 228 43.9
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 1.4e-42 177.6 222 44.1
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.4e-42 177.6 227 43.2
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 1.8e-42 177.2 236 42.8
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 2.3e-42 176.8 180 51.7
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.7e-42 175.3 166 49.4
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 6.7e-42 175.3 214 43.5
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 8.8e-42 174.9 144 58.3
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.1e-41 174.5 166 48.8
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.7e-40 170.6 180 47.2
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 2.2e-40 170.2 100 83.0
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.2e-38 164.5 254 37.8
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 2.6e-38 163.3 178 46.6
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 2.9e-37 159.8 146 54.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.4e-36 157.5 236 37.7
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.0e-34 151.4 140 51.4
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 1.7e-29 134.0 326 29.4
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 6.5e-29 132.1 102 60.8
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 6.3e-24 115.5 146 45.9
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 1.4e-23 114.4 111 53.2
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 4.2e-20 102.8 178 32.0
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 3.6e-19 99.8 180 34.4
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 8.0e-19 98.6 221 28.1
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.0e-18 98.2 177 29.4
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 1.0e-18 98.2 177 29.4
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.4e-18 97.8 225 31.6
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.8e-18 97.4 80 57.5
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.3e-18 97.1 177 29.9
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 3.0e-18 96.7 175 29.7
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 4.0e-18 96.3 214 27.1
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 4.0e-18 96.3 216 28.7
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 5.2e-18 95.9 217 29.0
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 6.7e-18 95.5 175 29.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 6.7e-18 95.5 176 29.5
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 6.7e-18 95.5 177 29.4
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 6.7e-18 95.5 226 27.9
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 8.8e-18 95.1 122 45.1
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 1.2e-17 94.7 177 29.4
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.5e-17 94.4 217 28.1
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.5e-17 94.4 177 27.1
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 2.0e-17 94.0 226 27.9
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 2.0e-17 94.0 177 27.1
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.6e-17 93.6 175 28.0
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 2.6e-17 93.6 218 28.0
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.3e-17 93.2 177 29.9
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 3.3e-17 93.2 218 27.1
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 5.7e-17 92.4 177 28.2
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 5.7e-17 92.4 177 28.2
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 7.5e-17 92.0 88 51.1
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 9.7e-17 91.7 220 28.6
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 9.7e-17 91.7 177 28.2
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.3e-16 91.3 177 27.7
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.7e-16 90.9 230 27.0
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 1.7e-16 90.9 211 27.5
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 2.2e-16 90.5 176 29.0
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 2.2e-16 90.5 220 27.3
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 2.2e-16 90.5 176 29.0
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 2.2e-16 90.5 177 28.2
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 2.2e-16 90.5 177 27.7
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 2.8e-16 90.1 176 29.5
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 2.8e-16 90.1 177 27.1
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.8e-16 90.1 177 27.1
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.8e-16 90.1 177 27.1
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 2.8e-16 90.1 177 27.1
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 2.8e-16 90.1 176 28.4
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.8e-16 90.1 177 27.7
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 3.7e-16 89.7 177 27.7
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 3.7e-16 89.7 177 27.7
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 3.7e-16 89.7 177 26.6
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 4.8e-16 89.4 231 26.4
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 8.3e-16 88.6 217 28.6
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 8.3e-16 88.6 177 27.1
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.1e-15 88.2 175 29.1
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 1.4e-15 87.8 220 28.6
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.8e-15 87.4 214 26.2
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 1.8e-15 87.4 177 26.0
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 2.4e-15 87.0 211 26.1
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 2.4e-15 87.0 176 27.8
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 3.1e-15 86.7 220 25.9
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 3.1e-15 86.7 222 27.0
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 4.1e-15 86.3 223 26.0
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 4.1e-15 86.3 176 27.3
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 5.3e-15 85.9 176 29.0
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 7.0e-15 85.5 176 29.5
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 9.1e-15 85.1 157 28.7
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 1.6e-14 84.3 188 26.6
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.6e-14 84.3 224 27.2
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.6e-14 84.3 157 28.7
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.6e-14 84.3 177 24.9
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 2.0e-14 84.0 177 26.6
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.7e-14 83.6 157 28.0
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 3.5e-14 83.2 230 28.3
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 5.9e-14 82.4 221 24.9
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 2.2e-13 80.5 159 30.2
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.5e-12 77.8 212 25.9
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.5e-12 77.8 239 24.3
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 4.2e-12 76.3 164 27.4
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 5.5e-12 75.9 196 25.0
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 2.1e-11 73.9 156 26.3
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 2.7e-11 73.6 167 27.5
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 1.3e-08 64.7 176 24.4
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 2.2e-08 63.9 125 29.6
CSS0001325 Camellia sinensis var. sinensis HOM05D007418 ORTHO05D009419 4.8e-08 62.8 50 58.0
CSS0038024 Camellia sinensis var. sinensis HOM05D003480 ORTHO05D001339 1.1e-07 61.6 42 66.7
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 1.6e-06 57.8 44 56.8


User provided reference genes

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