Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.4e-33 145.6 67 100.0
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.2e-32 142.5 67 98.5
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 1.3e-31 139.0 67 92.5
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 2.2e-31 138.3 67 89.6
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 3.8e-31 137.5 67 91.0
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 1.9e-30 135.2 67 88.1
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 4.6e-13 77.4 67 53.7
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 4.6e-13 77.4 67 53.7
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.0e-13 77.0 67 50.7
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.0e-13 77.0 67 50.7
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 3.0e-12 74.7 67 50.7
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.3e-11 70.9 67 46.3
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 3.7e-10 67.8 67 43.3
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 6.2e-10 67.0 68 48.5
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 3.1e-09 64.7 69 44.9
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 9.0e-09 63.2 50 56.0
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 9.0e-09 63.2 53 52.8
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.0e-08 62.0 50 54.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 3.4e-08 61.2 50 54.0
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.4e-08 61.2 50 54.0
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 5.8e-08 60.5 68 42.6
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 5.8e-08 60.5 50 56.0
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 7.6e-08 60.1 50 54.0
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 7.6e-08 60.1 53 49.1
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 7.6e-08 60.1 50 54.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.0e-07 59.7 44 59.1
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.0e-07 59.7 44 59.1
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.3e-07 59.3 49 53.1
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-07 59.3 44 59.1
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.2e-07 58.5 50 52.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.9e-07 58.2 44 59.1
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.8e-07 57.8 47 55.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 3.8e-07 57.8 50 52.0
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 4.9e-07 57.4 71 40.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 6.5e-07 57.0 44 56.8
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 6.5e-07 57.0 44 56.8
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 6.5e-07 57.0 44 56.8
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 6.5e-07 57.0 44 56.8
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 8.4e-07 56.6 44 56.8
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.1e-06 56.2 50 50.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 1.1e-06 56.2 50 50.0
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.1e-06 56.2 50 48.0
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.1e-06 56.2 53 49.1
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 1.1e-06 56.2 64 48.4
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.1e-06 56.2 67 38.8
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 1.9e-06 55.5 44 56.8
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 1.9e-06 55.5 54 48.1
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 3.2e-06 54.7 50 48.0
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 3.2e-06 54.7 52 46.2
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 4.2e-06 54.3 50 50.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 5.5e-06 53.9 50 48.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 5.5e-06 53.9 50 50.0
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 5.5e-06 53.9 52 50.0
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 7.1e-06 53.5 49 46.9
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 7.1e-06 53.5 51 52.9
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 7.1e-06 53.5 54 44.4
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 7.1e-06 53.5 51 52.9
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 7.1e-06 53.5 52 46.2
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 9.3e-06 53.1 52 46.2
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 9.3e-06 53.1 52 46.2
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 9.3e-06 53.1 52 46.2
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 9.3e-06 53.1 69 39.1
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 9.3e-06 53.1 52 50.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 9.3e-06 53.1 52 50.0
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 9.3e-06 53.1 52 44.2


User provided reference genes

Program Settings