Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040523 Chenopodium quinoa HOM05D001891 ORTHO05D005832 7.1e-198 693.7 349 100.0
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 3.6e-24 116.7 114 65.8
AUR62031880 Chenopodium quinoa HOM05D000078 ORTHO05D000025 5.2e-23 112.8 97 70.1
AUR62022173 Chenopodium quinoa HOM05D000078 ORTHO05D000025 6.3e-21 105.9 93 72.0
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 7.5e-14 82.4 47 78.7
Actinidia32078 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.3e-13 81.6 63 58.7
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 2.8e-13 80.5 46 76.1
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 4.8e-13 79.7 46 73.9
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 8.3e-13 79.0 46 73.9
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 8.3e-13 79.0 46 73.9
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 1.4e-12 78.2 46 76.1
Ah.01g005650 Amaranthus hybridus HOM05D000078 ORTHO05D000025 2.4e-12 77.4 158 40.5
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 2.4e-12 77.4 46 73.9
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 2.4e-12 77.4 46 71.7
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.4e-12 77.4 46 71.7
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.4e-12 77.4 46 71.7
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.4e-12 77.4 46 71.7
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.4e-12 77.4 46 71.7
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 2.4e-12 77.4 46 78.3
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 3.1e-12 77.0 46 71.7
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 4.1e-12 76.6 46 69.6
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 4.1e-12 76.6 46 71.7
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 5.4e-12 76.3 49 67.3
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 7.0e-12 75.9 46 69.6
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 9.1e-12 75.5 46 73.9
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 9.1e-12 75.5 46 69.6
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 9.1e-12 75.5 46 71.7
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 1.2e-11 75.1 46 69.6
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 1.2e-11 75.1 46 69.6
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 1.2e-11 75.1 46 71.7
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 1.2e-11 75.1 46 69.6
Ah.01g021860 Amaranthus hybridus HOM05D000078 ORTHO05D000025 1.6e-11 74.7 154 41.6
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.6e-11 74.7 46 69.6
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 1.6e-11 74.7 46 67.4
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 1.6e-11 74.7 46 69.6
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 2.7e-11 73.9 46 71.7
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 2.7e-11 73.9 46 67.4
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 3.5e-11 73.6 46 67.4
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 3.5e-11 73.6 46 67.4
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 3.5e-11 73.6 46 71.7
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.5e-11 73.2 46 67.4
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 4.5e-11 73.2 46 67.4
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 5.9e-11 72.8 46 67.4
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 5.9e-11 72.8 46 67.4
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 5.9e-11 72.8 46 67.4
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 5.9e-11 72.8 46 67.4
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 5.9e-11 72.8 46 67.4
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 5.9e-11 72.8 46 67.4
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 7.7e-11 72.4 46 67.4
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 7.7e-11 72.4 46 67.4
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 7.7e-11 72.4 46 69.6
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 67.4
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 67.4
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 67.4
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 67.4
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 67.4
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 67.4
MBI02_g41952_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-10 72.0 51 62.7
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 67.4
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 1.0e-10 72.0 46 69.6
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 1.3e-10 71.6 46 65.2
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.3e-10 71.6 46 65.2
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 1.3e-10 71.6 46 69.6
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 1.3e-10 71.6 46 65.2
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 1.3e-10 71.6 46 69.6
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 1.3e-10 71.6 46 69.6
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 1.3e-10 71.6 46 69.6
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 1.7e-10 71.2 46 65.2
arahy.Tifrunner.gnm1.ann1.62D34N Arachis hypogaea HOM05D001891 ORTHO05D005832 2.3e-10 70.9 48 62.5
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 2.3e-10 70.9 46 67.4
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 2.3e-10 70.9 46 67.4
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 2.3e-10 70.9 46 67.4
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 2.9e-10 70.5 47 63.8
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 2.9e-10 70.5 46 67.4
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 2.9e-10 70.5 46 65.2
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 3.8e-10 70.1 46 65.2
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 65.2
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 63.0
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 5.0e-10 69.7 50 60.0
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 65.2
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 67.4
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 65.2
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 65.2
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 65.2
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 65.2
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 5.0e-10 69.7 46 65.2
AL7G32320 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 8.6e-10 68.9 46 63.0
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 8.6e-10 68.9 46 65.2
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.6e-10 68.9 47 59.6
MBI01_g06556_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 8.6e-10 68.9 49 61.2
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 1.1e-09 68.6 46 63.0
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 1.1e-09 68.6 46 63.0
DCAR_016199 Daucus carota HOM05D000078 ORTHO05D000025 1.1e-09 68.6 150 36.7
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.1e-09 68.6 53 54.7
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 1.1e-09 68.6 46 63.0
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 1.1e-09 68.6 46 67.4
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.5e-09 67.4 46 58.7
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 3.3e-09 67.0 46 63.0
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 4.2e-09 66.6 46 58.7
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 4.2e-09 66.6 46 58.7
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 4.2e-09 66.6 46 58.7
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 7.2e-09 65.9 54 53.7
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 7.2e-09 65.9 46 58.7
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 7.2e-09 65.9 46 63.0
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 9.5e-09 65.5 46 56.5
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.2e-08 65.1 46 56.5
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 1.2e-08 65.1 46 60.9
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 1.6e-08 64.7 46 63.0
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 2.1e-08 64.3 46 58.7
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 2.1e-08 64.3 46 56.5
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 2.8e-08 63.9 46 58.7
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 4.7e-08 63.2 46 58.7
EL10Ac9g22106 Beta vulgaris HOM05D000078 ORTHO05D000025 6.1e-08 62.8 148 38.5
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 1.0e-07 62.0 46 58.7
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 1.8e-07 61.2 43 62.8
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 1.8e-07 61.2 46 58.7
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 4.0e-07 60.1 87 49.4
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 4.0e-07 60.1 45 57.8
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 5.2e-07 59.7 47 57.4
vmacro06240 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 5.2e-07 59.7 156 34.6
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.5e-06 58.2 44 61.4
Migut.I00922 Erythranthe guttata HOM05D000078 ORTHO05D000025 1.5e-06 58.2 149 38.3
Rhsim12G0202000 Rhododendron simsii HOM05D000078 ORTHO05D000025 2.0e-06 57.8 150 35.3
Prupe.7G222700 Prunus persica HOM05D000078 ORTHO05D000025 3.4e-06 57.0 154 37.0
TAR626G1888 Trochodendron aralioides HOM05D000078 ORTHO05D000025 5.7e-06 56.2 152 36.8
Sed0007458 Sechium edule HOM05D000078 ORTHO05D000025 7.5e-06 55.8 145 35.2


User provided reference genes

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