Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.2e-290 1001.5 476 100.0
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.0e-288 995.0 476 98.9
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 8.0e-269 929.9 476 91.8
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 1.3e-258 896.0 476 88.9
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 1.8e-244 849.0 473 85.0
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 2.3e-244 848.6 472 85.0
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 3.1e-244 848.2 471 84.7
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 8.9e-244 846.7 468 83.8
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.5e-243 845.9 473 84.4
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 9.9e-243 843.2 470 84.0
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.3e-242 842.8 473 83.7
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 6.4e-242 840.5 473 84.1
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 2.4e-241 838.6 471 84.7
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 3.2e-241 838.2 476 83.8
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 3.2e-241 838.2 476 83.8
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 5.4e-241 837.4 475 84.0
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 7.1e-241 837.0 472 83.1
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 9.2e-241 836.6 474 83.1
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 2.1e-240 835.5 472 83.9
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 2.7e-240 835.1 472 83.9
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.3e-239 832.8 473 83.1
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.7e-239 832.4 472 82.8
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 3.0e-239 831.6 473 82.9
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.9e-239 831.2 473 82.9
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 1.1e-238 829.7 472 82.8
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.2e-237 826.2 476 82.6
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 2.1e-237 825.5 473 82.5
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 2.1e-237 825.5 472 83.1
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 2.8e-237 825.1 472 82.2
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 3.6e-237 824.7 472 83.3
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 4.7e-237 824.3 472 82.6
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 8.1e-237 823.5 474 82.1
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 8.1e-237 823.5 473 82.5
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 1.4e-236 822.8 472 82.2
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 1.4e-236 822.8 478 80.5
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.8e-236 822.4 472 81.6
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.8e-236 822.4 478 82.2
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 1.8e-236 822.4 472 83.3
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 2.4e-236 822.0 472 82.8
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 3.1e-236 821.6 472 81.4
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 3.1e-236 821.6 472 83.3
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 6.8e-236 820.5 477 80.7
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 1.2e-235 819.7 467 82.0
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.5e-235 819.3 472 82.0
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 3.4e-235 818.1 472 82.6
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 3.4e-235 818.1 474 81.6
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 5.8e-235 817.4 481 81.7
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 9.9e-235 816.6 472 81.1
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 1.3e-234 816.2 472 80.9
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 1.3e-234 816.2 473 81.0
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.3e-234 816.2 472 82.0
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 1.7e-234 815.8 472 82.6
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.7e-234 815.8 472 82.2
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.9e-234 815.1 472 82.0
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.9e-234 815.1 479 80.8
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 4.9e-234 814.3 474 81.2
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.1e-233 813.1 472 82.0
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.1e-233 813.1 443 85.3
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 3.2e-233 811.6 478 81.2
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 3.2e-233 811.6 470 82.1
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.2e-233 811.2 449 84.6
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 5.4e-233 810.8 456 82.7
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 9.3e-233 810.1 473 80.8
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 2.7e-232 808.5 472 81.1
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 3.5e-232 808.1 472 80.7
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 4.6e-232 807.7 476 81.5
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 6.0e-232 807.4 472 80.9
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 7.8e-232 807.0 472 80.7
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 7.8e-232 807.0 474 80.4
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 1.0e-231 806.6 472 80.5
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 1.7e-231 805.8 473 80.8
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.3e-231 805.4 472 80.5
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 6.6e-231 803.9 457 83.4
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 1.1e-230 803.1 475 81.3
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.5e-230 802.7 472 81.1
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.5e-230 802.7 474 79.5
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 3.3e-230 801.6 455 83.1
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 5.6e-230 800.8 473 81.2
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 9.6e-230 800.0 473 81.0
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.3e-229 799.7 494 77.7
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 3.6e-229 798.1 480 79.2
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 4.8e-229 797.7 473 80.1
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.1e-228 796.6 478 78.9
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 2.4e-228 795.4 478 80.3
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 2.4e-228 795.4 479 80.2
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 1.2e-227 793.1 482 77.8
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 3.4e-227 791.6 456 81.4
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 9.9e-227 790.0 475 79.8
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 1.3e-226 789.6 481 79.0
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 1.7e-226 789.3 471 80.7
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.9e-226 788.5 473 79.9
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 6.4e-226 787.3 479 79.5
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 6.4e-226 787.3 455 81.8
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 8.4e-226 786.9 473 79.1
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 1.1e-225 786.6 472 80.7
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.4e-225 786.2 485 78.6
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.9e-225 785.8 472 80.3
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 7.1e-225 783.9 479 79.3
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 7.6e-219 763.8 472 77.8
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 2.7e-216 755.4 476 76.3
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-214 750.0 496 74.6
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 6.2e-213 744.2 493 74.4
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 1.3e-207 726.5 471 74.7
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 2.5e-206 722.2 471 74.5
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 1.6e-205 719.5 500 73.0
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 2.1e-205 719.2 449 74.4
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 9.0e-204 713.8 469 71.9
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 1.9e-198 696.0 377 85.9
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 3.3e-198 695.3 495 70.9
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 4.3e-198 694.9 470 71.3
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 5.7e-198 694.5 469 70.1
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 2.8e-197 692.2 473 72.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.1e-188 662.1 464 70.3
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 4.5e-187 658.3 471 69.6
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 5.3e-180 634.8 460 69.6
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 4.4e-174 615.1 368 77.7
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 5.3e-172 608.2 368 77.2
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 7.5e-158 561.2 480 60.6
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.4e-148 530.4 345 75.1
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.7e-146 523.5 304 80.6
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.1e-140 504.2 304 78.9
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 3.3e-137 492.7 405 60.7
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 6.2e-136 488.4 463 52.7
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 8.1e-136 488.0 281 81.5
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.1e-135 487.6 284 81.0
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 1.2e-123 447.6 301 73.1
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.2e-123 447.6 304 71.7
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 3.1e-103 379.8 211 83.9
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 2.0e-102 377.1 245 73.5
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.0e-99 365.5 228 75.0
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 6.0e-99 365.5 228 75.0
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 8.7e-90 335.1 410 45.9
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 2.5e-89 333.6 200 79.5
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.3e-82 311.2 457 42.5
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 8.5e-69 265.4 152 78.9
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 7.2e-68 262.3 421 39.9
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.6e-65 253.8 196 63.3
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.7e-64 251.1 196 62.8
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 6.5e-61 239.2 164 69.5
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 8.5e-61 238.8 164 69.5
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.8e-47 194.5 108 83.3
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.0e-47 192.6 99 84.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 7.0e-47 192.6 99 84.8
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 7.8e-38 162.5 105 71.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.2e-35 155.2 97 73.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 1.5e-33 148.3 95 75.8
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 6.4e-32 142.9 77 83.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 2.5e-28 131.0 77 79.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 2.2e-24 117.9 91 64.8
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 6.6e-21 106.3 66 71.2
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.5e-20 105.1 135 40.7
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 3.3e-20 104.0 56 85.7
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.6e-17 94.4 72 68.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 2.6e-17 94.4 72 68.1
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 4.1e-15 87.0 54 75.9
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 5.4e-15 86.7 63 69.8
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.3e-13 82.0 46 82.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 7.3e-12 76.3 35 94.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 9.9e-09 65.9 73 43.8
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 8.4e-08 62.8 34 82.4
arahy.Tifrunner.gnm1.ann1.E22CU6 Arachis hypogaea HOM05D001714 ORTHO05D084687 2.7e-06 57.8 43 72.1


User provided reference genes

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