Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 2.8e-290 1001.1 476 100.0
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 3.5e-288 994.2 476 98.9
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 6.1e-269 930.2 476 92.0
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 9.8e-259 896.3 476 89.3
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 7.3e-246 853.6 473 85.6
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 8.1e-245 850.1 472 85.4
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.3e-244 848.6 471 84.9
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.0e-244 847.8 473 84.8
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 5.2e-244 847.4 473 84.4
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 5.2e-244 847.4 468 84.0
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 2.6e-243 845.1 470 84.5
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.3e-242 842.8 476 84.5
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.3e-242 842.8 476 84.5
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 2.2e-242 842.0 475 84.6
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.9e-242 840.9 473 84.4
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 8.4e-242 840.1 472 84.5
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.9e-241 839.0 471 84.9
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.4e-241 838.6 474 83.5
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 4.1e-241 837.8 472 83.3
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 1.6e-240 835.9 472 84.1
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 4.6e-240 834.3 472 83.5
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 7.8e-240 833.6 473 83.3
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 7.8e-240 833.6 473 83.3
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.3e-239 832.8 472 83.1
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 3.0e-239 831.6 473 83.1
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.1e-239 830.9 476 83.2
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.1e-238 829.7 472 83.5
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 1.9e-238 828.9 472 83.3
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 4.3e-238 827.8 472 83.7
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 5.6e-238 827.4 473 82.9
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 7.3e-238 827.0 472 82.6
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 7.3e-238 827.0 472 83.9
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 9.6e-238 826.6 472 83.5
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 1.6e-237 825.9 472 83.9
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 2.1e-237 825.5 474 82.3
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 2.1e-237 825.5 473 82.9
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 3.6e-237 824.7 472 82.6
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 3.6e-237 824.7 478 81.0
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 4.7e-237 824.3 472 82.0
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 8.1e-237 823.5 472 81.8
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.1e-236 823.2 478 82.4
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 1.8e-236 822.4 477 81.1
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 4.0e-236 821.2 472 83.1
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 6.8e-236 820.5 467 82.2
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 6.8e-236 820.5 472 82.8
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 8.9e-236 820.1 472 83.3
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.2e-235 819.7 472 82.6
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.5e-235 819.3 472 82.4
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 1.5e-235 819.3 474 81.6
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 1.5e-235 819.3 472 81.8
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 2.6e-235 818.5 474 81.9
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 3.4e-235 818.1 473 81.2
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 3.4e-235 818.1 472 81.4
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 4.4e-235 817.8 472 81.1
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 4.4e-235 817.8 481 81.9
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 5.8e-235 817.4 472 82.6
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 1.7e-234 815.8 470 82.8
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 3.8e-234 814.7 443 85.8
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 3.8e-234 814.7 478 81.6
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 1.1e-233 813.1 449 85.1
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 1.9e-233 812.4 456 83.1
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 2.4e-233 812.0 473 81.0
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 4.2e-233 811.2 472 81.1
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 4.2e-233 811.2 474 81.0
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 4.2e-233 811.2 472 81.6
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 7.1e-233 810.4 472 81.4
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 7.1e-233 810.4 479 80.6
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 9.3e-233 810.1 472 81.1
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 1.2e-232 809.7 476 81.7
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 2.7e-232 808.5 472 80.9
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 2.7e-232 808.5 472 80.7
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 6.0e-232 807.4 473 81.2
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 7.8e-232 807.0 472 81.8
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 7.8e-232 807.0 474 80.2
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 2.3e-231 805.4 473 81.8
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 3.9e-231 804.7 473 81.6
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 3.9e-231 804.7 457 83.6
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 6.6e-231 803.9 475 81.5
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 1.9e-230 802.4 494 78.1
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 1.9e-230 802.4 455 83.1
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 4.3e-230 801.2 480 79.6
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.3e-229 799.7 473 80.5
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 2.1e-229 798.9 478 80.8
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 3.6e-229 798.1 478 79.3
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 3.6e-229 798.1 479 80.6
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 4.0e-228 794.7 482 78.0
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 5.3e-228 794.3 475 80.4
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 6.9e-228 793.9 471 81.3
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 1.2e-227 793.1 473 80.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 2.0e-227 792.3 456 81.4
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 2.6e-227 792.0 455 82.4
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 3.4e-227 791.6 473 79.7
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 5.8e-227 790.8 485 79.2
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 5.8e-227 790.8 472 81.4
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 7.6e-227 790.4 472 80.9
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 7.6e-227 790.4 481 79.0
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 9.9e-227 790.0 479 80.0
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.1e-225 786.6 479 79.7
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 1.2e-219 766.5 472 78.2
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.1e-217 760.0 476 76.9
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 4.6e-216 754.6 496 75.2
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.3e-214 748.4 493 75.1
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 7.9e-208 727.2 471 74.9
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 1.5e-206 723.0 471 74.7
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 4.3e-206 721.5 500 73.0
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 1.3e-205 719.9 449 74.2
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 2.4e-204 715.7 469 71.9
Dinv41278 Davidia involucrata HOM05D004186 ORTHO05D006965 5.1e-199 698.0 377 86.5
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 6.7e-199 697.6 470 71.7
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.5e-198 696.4 473 72.5
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 1.9e-198 696.0 469 70.4
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.9e-198 696.0 495 71.1
Hund09010 Selenicereus undatus HOM05D004186 ORTHO05D006965 8.2e-189 664.1 464 70.7
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 3.4e-187 658.7 471 69.9
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 2.4e-180 636.0 460 69.6
Gohir.D06G185466 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.8e-175 617.5 368 78.3
Gorai.010G217000 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.1e-172 610.5 368 77.7
Aqoxy7G03142 Aquilegia oxysepala HOM05D004186 ORTHO05D006965 4.0e-159 565.5 480 61.2
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 1.2e-147 527.3 345 74.8
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 5.0e-146 521.9 304 80.3
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.4e-140 503.1 304 78.6
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 6.6e-138 495.0 405 60.7
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.2e-136 490.7 284 81.3
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.6e-136 490.3 281 81.9
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 3.6e-136 489.2 463 52.9
MD13G1265000 Malus domestica HOM05D004186 ORTHO05D006965 2.4e-124 449.9 301 73.8
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 3.5e-123 446.0 304 71.4
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 6.2e-104 382.1 211 84.4
SEGI_37950 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.2e-102 377.9 245 73.9
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.2e-99 367.9 228 75.4
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 1.2e-99 367.9 228 75.4
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 5.1e-90 335.9 200 80.0
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 6.7e-90 335.5 410 46.1
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 1.0e-82 311.6 457 42.7
SalBow6G2747 Salvia bowleyana HOM05D004186 ORTHO05D015971 2.5e-68 263.8 152 78.9
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 5.5e-68 262.7 421 40.1
A02p08350 Brassica napus HOM05D004186 ORTHO05D015971 2.0e-65 254.2 196 63.8
BraA02t05904Z Brassica rapa HOM05D004186 ORTHO05D015971 1.3e-64 251.5 196 63.3
arahy.Tifrunner.gnm1.ann1.NDN785 Arachis hypogaea HOM05D004186 ORTHO05D015971 1.3e-61 241.5 164 70.7
arahy.Tifrunner.gnm1.ann1.P4UX3D Arachis hypogaea HOM05D004186 ORTHO05D015971 1.7e-61 241.1 164 70.7
A02p08340 Brassica napus HOM05D004186 ORTHO05D006965 1.8e-47 194.5 108 83.3
Rhsim01G0008600 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.2e-46 191.8 99 84.8
RhsimUnG0079500 Rhododendron simsii HOM05D004186 ORTHO05D015971 1.2e-46 191.8 99 84.8
SMO181G0029 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 7.8e-38 162.5 105 71.4
HanXRQChr09g0269751 Helianthus annuus HOM05D004186 ORTHO05D015971 1.6e-35 154.8 97 74.2
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 3.0e-34 150.6 95 76.8
RcHm_v2.0_Chr5g0046871 Rosa chinensis HOM05D004186 ORTHO05D015971 4.9e-32 143.3 77 83.1
RcHm_v2.0_Chr5g0036521 Rosa chinensis HOM05D004186 ORTHO05D015971 1.9e-28 131.3 77 79.2
TAR383G0623 Trochodendron aralioides HOM05D004186 ORTHO05D415797 2.2e-24 117.9 91 64.8
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 5.0e-21 106.7 135 41.5
Zm00001eb101000 Zea mays HOM05D004186 ORTHO05D000030 6.6e-21 106.3 66 71.2
Zm00001eb265380 Zea mays HOM05D004186 ORTHO05D008381 3.3e-20 104.0 56 85.7
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 3.4e-17 94.0 72 68.1
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 3.4e-17 94.0 72 68.1
Sc14g0005990 Simmondsia chinensis HOM05D004186 ORTHO05D039000 4.1e-15 87.0 54 75.9
SalBow7G3706 Salvia bowleyana HOM05D004186 ORTHO05D352404 4.6e-14 83.6 63 68.3
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.3e-13 82.0 46 82.6
EL10Ac2g04384 Beta vulgaris HOM05D004186 ORTHO05D039000 7.3e-12 76.3 35 94.3
C02p54480 Brassica napus HOM05D003206 ORTHO05D016781 9.9e-09 65.9 73 43.8
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 8.4e-08 62.8 34 82.4
arahy.Tifrunner.gnm1.ann1.E22CU6 Arachis hypogaea HOM05D001714 ORTHO05D084687 2.1e-06 58.2 43 72.1


User provided reference genes

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