Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 2.1e-79 298.9 145 100.0
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 4.7e-71 271.2 142 93.7
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 1.2e-69 266.5 140 92.9
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.7e-68 262.7 141 90.8
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 3.7e-68 261.5 140 90.7
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 8.3e-68 260.4 142 90.1
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.1e-67 260.0 141 89.4
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-67 260.0 141 89.4
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.1e-67 260.0 141 89.4
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.1e-67 260.0 141 89.4
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.1e-67 260.0 141 89.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.4e-67 259.6 141 89.4
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.4e-67 259.6 141 89.4
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 1.4e-67 259.6 142 89.4
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.4e-67 258.8 141 88.7
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.4e-67 258.8 141 88.7
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 4.1e-67 258.1 142 88.7
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.1e-67 258.1 141 87.9
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 5.4e-67 257.7 142 88.0
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-66 256.5 141 87.2
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.2e-66 256.5 141 87.9
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 1.6e-66 256.1 148 85.1
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.6e-66 256.1 128 95.3
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 2.0e-66 255.8 140 87.9
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 2.0e-66 255.8 142 87.3
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 3.5e-66 255.0 141 87.9
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 4.6e-66 254.6 135 91.1
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 4.6e-66 254.6 141 86.5
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 4.6e-66 254.6 142 87.3
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 6.0e-66 254.2 131 93.1
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.0e-66 254.2 142 88.0
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 6.0e-66 254.2 142 88.0
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 7.8e-66 253.8 141 87.2
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 7.8e-66 253.8 141 87.2
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.8e-66 253.8 141 87.2
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.8e-66 253.8 141 87.2
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 7.8e-66 253.8 142 87.3
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 7.8e-66 253.8 142 87.3
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 1.0e-65 253.4 138 89.1
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.0e-65 253.4 129 93.0
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 1.0e-65 253.4 128 94.5
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.3e-65 253.1 137 89.8
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.3e-65 253.1 137 89.8
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 1.7e-65 252.7 141 86.5
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 1.7e-65 252.7 148 83.8
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.7e-65 252.7 141 86.5
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 1.7e-65 252.7 148 83.8
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.7e-65 252.7 140 87.1
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.7e-65 252.7 134 90.3
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 1.7e-65 252.7 141 87.2
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 2.3e-65 252.3 127 95.3
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.3e-65 252.3 143 86.0
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.9e-65 251.5 140 85.0
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 3.9e-65 251.5 140 85.0
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 3.9e-65 251.5 147 83.7
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 3.9e-65 251.5 141 86.5
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 3.9e-65 251.5 141 86.5
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 3.9e-65 251.5 138 87.7
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 3.9e-65 251.5 141 86.5
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 5.0e-65 251.1 141 85.8
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 5.0e-65 251.1 140 87.1
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 5.0e-65 251.1 140 87.1
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 6.6e-65 250.8 141 85.8
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 6.6e-65 250.8 136 88.2
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 8.6e-65 250.4 140 87.1
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.1e-64 250.0 143 84.6
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 1.1e-64 250.0 132 89.4
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 1.1e-64 250.0 140 86.4
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 1.1e-64 250.0 139 87.1
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 1.5e-64 249.6 139 85.6
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.9e-64 249.2 141 85.8
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 1.9e-64 249.2 140 85.7
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.9e-64 249.2 143 84.6
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 2.5e-64 248.8 139 84.9
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 2.5e-64 248.8 140 86.4
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.5e-64 248.8 138 88.4
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 2.5e-64 248.8 140 85.7
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 2.5e-64 248.8 139 85.6
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 2.5e-64 248.8 139 84.9
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.3e-64 248.1 130 91.5
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.3e-64 248.1 130 91.5
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.3e-64 248.1 141 85.8
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 4.3e-64 248.1 131 90.8
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 4.3e-64 248.1 131 90.8
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 4.3e-64 248.1 131 90.8
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 4.3e-64 248.1 140 85.0
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 4.3e-64 248.1 140 85.0
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 5.6e-64 247.7 131 90.8
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 5.6e-64 247.7 141 85.8
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-64 247.7 140 85.7
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-64 247.7 140 85.7
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-64 247.7 140 85.7
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-64 247.7 140 85.7
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-64 247.7 140 85.7
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 5.6e-64 247.7 140 85.7
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 5.6e-64 247.7 140 85.7
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 7.3e-64 247.3 127 92.9
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 7.3e-64 247.3 142 84.5
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 7.3e-64 247.3 131 91.6
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.2e-63 246.5 140 85.0
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.2e-63 246.5 140 85.0
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 1.2e-63 246.5 135 86.7
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.2e-63 246.5 137 86.9
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.2e-63 246.5 137 86.9
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 1.6e-63 246.1 139 84.9
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.6e-63 246.1 131 90.1
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.8e-63 245.4 127 89.8
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 2.8e-63 245.4 127 89.8
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.8e-63 245.4 124 93.5
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 2.8e-63 245.4 134 91.0
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 3.6e-63 245.0 131 88.5
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 3.6e-63 245.0 131 90.1
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 4.7e-63 244.6 128 91.4
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 4.7e-63 244.6 130 90.0
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 4.7e-63 244.6 128 91.4
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 4.7e-63 244.6 128 91.4
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 4.7e-63 244.6 128 91.4
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 6.2e-63 244.2 137 85.4
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 6.2e-63 244.2 134 88.1
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 6.2e-63 244.2 142 83.1
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 6.2e-63 244.2 142 83.1
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 6.2e-63 244.2 139 86.3
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 8.1e-63 243.8 141 84.4
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 8.1e-63 243.8 131 87.8
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 8.1e-63 243.8 128 89.8
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 1.4e-62 243.0 131 88.5
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 2.3e-62 242.3 131 87.8
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 6.8e-62 240.7 131 88.5
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 8.9e-62 240.4 142 82.4
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 8.9e-62 240.4 137 85.4
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.2e-61 240.0 140 82.9
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.2e-61 240.0 140 82.9
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 1.5e-61 239.6 136 84.6
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 4.4e-61 238.0 139 82.7
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 7.5e-61 237.3 136 86.0
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 7.5e-61 237.3 130 87.7
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 7.5e-61 237.3 134 85.8
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 8.3e-60 233.8 126 87.3
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 1.1e-59 233.4 135 83.0
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 1.6e-58 229.6 133 85.7
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 1.9e-56 222.6 131 83.2
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.1e-54 216.9 112 93.8
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 4.0e-54 214.9 191 60.2
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 3.2e-51 205.3 139 74.8
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 5.4e-51 204.5 126 79.4
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.0e-49 200.3 124 71.0
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 1.3e-49 199.9 138 65.2
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 1.2e-47 193.4 141 66.0
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.0e-45 186.0 114 75.4
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.6e-42 174.9 125 72.8
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 6.0e-42 174.5 87 94.3
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 8.7e-41 170.6 105 80.0
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.6e-39 166.4 82 96.3
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 6.9e-38 161.0 94 84.0
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.5e-37 159.8 84 86.9
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 3.8e-36 155.2 94 79.8
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 3.8e-36 155.2 94 78.7
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.4e-35 153.3 140 60.0
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 2.8e-31 139.0 71 90.1
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-30 136.3 95 76.8
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 2.2e-28 129.4 71 88.7
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 8.4e-28 127.5 71 88.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.2e-27 125.2 71 87.3
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 1.3e-25 120.2 76 77.6
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 8.7e-25 117.5 70 81.4
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-21 107.1 64 81.2
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 6.3e-15 84.7 46 87.0
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 1.9e-11 73.2 43 74.4


User provided reference genes

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