Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.5e-77 292.7 145 100.0
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 9.5e-56 220.3 131 87.8
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 9.5e-56 220.3 131 87.8
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 9.5e-56 220.3 131 87.8
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.3e-49 199.1 131 81.7
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 4.8e-39 164.9 136 67.6
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 7.9e-26 120.9 136 53.7
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 2.3e-25 119.4 74 83.8
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 2.3e-25 119.4 135 52.6
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 5.1e-25 118.2 135 53.3
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 8.7e-25 117.5 132 52.3
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 8.7e-25 117.5 138 57.2
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 8.7e-25 117.5 135 53.3
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.1e-24 117.1 135 53.3
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.1e-24 117.1 133 53.4
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.9e-24 116.3 144 50.0
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 2.5e-24 115.9 133 53.4
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 3.3e-24 115.5 142 52.8
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 7.4e-24 114.4 133 52.6
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 9.6e-24 114.0 131 55.0
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.3e-23 113.6 121 55.4
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 2.1e-23 112.8 139 55.4
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 2.8e-23 112.5 151 48.3
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 4.8e-23 111.7 138 50.7
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 6.2e-23 111.3 138 52.2
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 6.2e-23 111.3 147 49.7
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 6.2e-23 111.3 127 52.8
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 8.2e-23 110.9 127 52.8
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 8.2e-23 110.9 126 54.8
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 1.1e-22 110.5 146 49.3
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 1.4e-22 110.2 126 52.4
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.8e-22 109.8 134 52.2
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.8e-22 109.8 147 49.7
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 2.4e-22 109.4 133 54.1
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 2.4e-22 109.4 136 52.9
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 2.4e-22 109.4 138 52.9
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 2.4e-22 109.4 124 51.6
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 3.1e-22 109.0 139 46.8
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 3.1e-22 109.0 144 46.5
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 3.1e-22 109.0 137 49.6
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 4.0e-22 108.6 140 52.9
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 5.3e-22 108.2 134 52.2
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.3e-22 108.2 146 47.9
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 5.3e-22 108.2 125 49.6
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 5.3e-22 108.2 138 50.0
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 6.9e-22 107.8 135 53.3
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 6.9e-22 107.8 148 48.0
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 6.9e-22 107.8 123 52.0
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 6.9e-22 107.8 143 46.2
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 9.0e-22 107.5 147 47.6
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 9.0e-22 107.5 144 50.0
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 9.0e-22 107.5 145 48.3
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-21 107.1 134 50.0
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-21 107.1 136 52.2
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.2e-21 107.1 136 52.2
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.5e-21 106.7 135 52.6
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 2.0e-21 106.3 134 50.7
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 2.0e-21 106.3 134 50.7
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 2.0e-21 106.3 136 50.0
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 2.0e-21 106.3 140 45.7
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 2.6e-21 105.9 132 53.0
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 3.4e-21 105.5 125 54.4
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 3.4e-21 105.5 135 51.9
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 4.5e-21 105.1 145 48.3
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 4.5e-21 105.1 145 46.9
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 5.8e-21 104.8 142 50.7
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 5.8e-21 104.8 142 50.7
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 5.8e-21 104.8 142 50.7
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 5.8e-21 104.8 143 49.0
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.8e-21 104.8 146 47.3
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 7.6e-21 104.4 147 46.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 7.6e-21 104.4 129 50.4
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.0e-20 104.0 138 49.3
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 1.0e-20 104.0 134 48.5
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 1.0e-20 104.0 127 49.6
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 1.0e-20 104.0 150 48.0
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 1.0e-20 104.0 139 43.9
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.0e-20 104.0 147 47.6
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.3e-20 103.6 133 48.9
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.3e-20 103.6 136 44.9
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 1.3e-20 103.6 140 50.0
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 1.3e-20 103.6 138 47.8
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.7e-20 103.2 120 52.5
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.7e-20 103.2 144 48.6
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.2e-20 102.8 120 52.5
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 2.2e-20 102.8 140 47.1
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 2.2e-20 102.8 145 43.4
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 2.2e-20 102.8 139 47.5
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 2.2e-20 102.8 135 50.4
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 2.2e-20 102.8 129 48.1
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 2.9e-20 102.4 144 48.6
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.9e-20 102.4 135 47.4
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 3.8e-20 102.1 121 52.9
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.8e-20 102.1 121 52.9
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 4.9e-20 101.7 137 46.0
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.9e-20 101.7 123 52.0
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 4.9e-20 101.7 144 45.1
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 4.9e-20 101.7 138 48.6
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 4.9e-20 101.7 143 48.3
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 6.5e-20 101.3 124 51.6
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 8.4e-20 100.9 147 44.9
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 8.4e-20 100.9 135 47.4
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 1.1e-19 100.5 135 49.6
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 1.1e-19 100.5 123 53.7
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 1.4e-19 100.1 139 46.0
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-19 100.1 122 49.2
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.4e-19 100.1 132 47.0
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.4e-19 100.1 146 44.5
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.4e-19 100.1 124 50.8
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.4e-19 100.1 124 50.8
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 1.9e-19 99.8 140 49.3
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 1.9e-19 99.8 124 50.8
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.5e-19 99.4 139 44.6
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 3.2e-19 99.0 134 48.5
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 3.2e-19 99.0 123 54.5
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 4.2e-19 98.6 140 49.3
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 5.5e-19 98.2 135 47.4
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 9.3e-19 97.4 139 47.5
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 9.3e-19 97.4 139 43.2
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.2e-18 97.1 144 46.5
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 1.2e-18 97.1 123 47.2
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.6e-18 96.7 139 46.0
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 1.6e-18 96.7 135 46.7
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.7e-18 95.9 140 48.6
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.7e-18 95.9 135 46.7
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 3.5e-18 95.5 139 48.2
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 7.9e-18 94.4 135 45.2
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 1.0e-17 94.0 133 47.4
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.3e-17 93.6 136 47.1
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 2.3e-17 92.8 131 45.8
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 5.1e-17 91.7 135 43.7
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.9e-16 89.7 137 46.0
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 4.3e-16 88.6 139 40.3
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 1.8e-14 83.2 120 42.5
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.5e-13 80.1 123 44.7
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 2.0e-13 79.7 134 39.6
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.4e-13 79.0 123 43.9
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 7.7e-13 77.8 136 40.4
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 1.7e-12 76.6 100 49.0
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 1.9e-11 73.2 142 38.0
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 2.5e-11 72.8 117 40.2
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 7.9e-10 67.8 141 37.6
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 1.0e-09 67.4 129 34.9
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 8.8e-09 64.3 125 37.6
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.5e-08 63.5 137 37.2
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 1.5e-08 63.5 89 46.1
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 2.5e-08 62.8 124 39.5
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 3.3e-08 62.4 126 38.1
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 4.3e-08 62.0 45 66.7
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 4.3e-08 62.0 63 54.0
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 5.7e-08 61.6 123 37.4
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.2e-07 59.7 142 37.3
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 3.7e-07 58.9 135 36.3
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 6.3e-07 58.2 44 65.9
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 1.8e-06 56.6 144 34.7
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 2.4e-06 56.2 135 34.8
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 9.1e-06 54.3 129 35.7
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 9.1e-06 54.3 108 36.1


User provided reference genes

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