Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-112 409.5 202 100.0
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-112 409.5 202 100.0
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-112 409.5 202 100.0
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-112 409.5 202 100.0
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.5e-112 409.5 202 100.0
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 7.7e-88 327.4 195 78.5
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 7.0e-65 251.1 198 60.1
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 2.0e-64 249.6 196 61.7
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 4.6e-64 248.4 201 60.2
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 4.6e-64 248.4 196 62.8
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 4.6e-64 248.4 201 59.7
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 4.6e-64 248.4 201 59.7
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 7.8e-64 247.7 196 60.2
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.0e-63 247.3 201 59.7
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 1.0e-63 247.3 201 59.7
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.7e-63 246.5 201 59.2
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.7e-63 246.5 196 60.7
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 2.3e-63 246.1 196 61.2
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 3.0e-63 245.7 198 60.1
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 3.0e-63 245.7 198 60.1
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.9e-63 245.4 200 60.0
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 3.9e-63 245.4 203 59.6
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 5.0e-63 245.0 196 61.2
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 5.0e-63 245.0 202 59.9
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 6.6e-63 244.6 200 59.5
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 6.6e-63 244.6 198 58.6
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 8.6e-63 244.2 196 60.2
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 8.6e-63 244.2 198 58.6
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 8.6e-63 244.2 200 59.5
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 8.6e-63 244.2 200 59.5
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 8.6e-63 244.2 200 59.5
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.1e-62 243.8 196 60.2
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.1e-62 243.8 196 60.2
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 1.1e-62 243.8 198 60.1
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.5e-62 243.4 198 60.6
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 1.5e-62 243.4 196 60.2
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.5e-62 243.4 198 59.1
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.5e-62 243.4 198 59.6
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 1.9e-62 243.0 196 59.7
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 2.5e-62 242.7 196 59.7
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.5e-62 242.7 198 59.1
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.5e-62 242.7 198 59.1
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 2.5e-62 242.7 196 60.7
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 2.5e-62 242.7 203 58.6
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 3.3e-62 242.3 196 59.7
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.3e-62 242.3 200 59.0
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 3.3e-62 242.3 198 59.1
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 3.3e-62 242.3 196 59.2
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 3.3e-62 242.3 196 59.2
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 3.3e-62 242.3 196 60.2
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 4.3e-62 241.9 204 58.3
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 7.3e-62 241.1 196 58.7
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 9.5e-62 240.7 203 57.1
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 9.5e-62 240.7 196 59.2
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 1.2e-61 240.4 198 60.1
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.6e-61 240.0 198 59.1
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 1.6e-61 240.0 202 57.9
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.6e-61 240.0 200 57.5
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 1.6e-61 240.0 200 58.0
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 2.1e-61 239.6 196 58.2
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 2.1e-61 239.6 196 59.7
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 2.1e-61 239.6 196 58.2
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 2.1e-61 239.6 197 58.4
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 2.8e-61 239.2 196 58.7
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 2.8e-61 239.2 200 59.5
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 3.6e-61 238.8 202 58.4
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 3.6e-61 238.8 202 57.9
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 3.6e-61 238.8 202 58.4
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 3.6e-61 238.8 202 58.4
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 3.6e-61 238.8 202 57.9
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 3.6e-61 238.8 200 58.0
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 3.6e-61 238.8 198 58.1
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 3.6e-61 238.8 196 59.7
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 4.7e-61 238.4 198 58.6
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 4.7e-61 238.4 200 57.5
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.7e-61 238.4 198 58.1
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 4.7e-61 238.4 196 58.2
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 4.7e-61 238.4 196 58.7
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 4.7e-61 238.4 198 57.6
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 6.2e-61 238.0 200 58.0
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 6.2e-61 238.0 201 58.2
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 6.2e-61 238.0 196 57.7
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 8.0e-61 237.7 200 57.5
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.1e-60 237.3 198 57.6
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.4e-60 236.9 200 58.0
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.4e-60 236.9 200 58.0
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 1.4e-60 236.9 200 58.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.3e-60 236.1 198 57.6
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 2.3e-60 236.1 200 58.5
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 3.1e-60 235.7 196 58.2
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.1e-60 235.7 198 57.6
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 3.1e-60 235.7 200 57.5
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 3.1e-60 235.7 205 56.1
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.0e-60 235.3 198 57.6
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 4.0e-60 235.3 203 57.1
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 5.2e-60 235.0 200 57.0
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 6.8e-60 234.6 200 57.5
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 6.8e-60 234.6 197 58.4
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 6.8e-60 234.6 200 57.0
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 8.9e-60 234.2 196 57.7
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.5e-59 233.4 203 55.7
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 1.5e-59 233.4 198 57.1
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 1.5e-59 233.4 197 56.3
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 2.6e-59 232.6 200 56.5
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 3.4e-59 232.3 196 57.7
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 5.8e-59 231.5 200 55.5
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 5.8e-59 231.5 196 57.1
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.7e-58 229.9 196 57.1
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 3.7e-58 228.8 200 55.5
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 8.3e-58 227.6 198 55.6
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.4e-57 226.9 206 55.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 3.2e-57 225.7 196 56.1
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 5.4e-57 224.9 196 54.6
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 5.4e-57 224.9 201 53.7
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 2.7e-56 222.6 201 54.2
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 3.5e-56 222.2 201 54.2
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 4.6e-56 221.9 198 52.0
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 4.6e-56 221.9 201 53.7
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 2.3e-55 219.5 199 55.3
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 3.9e-55 218.8 196 54.1
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 6.6e-55 218.0 199 55.3
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 1.5e-54 216.9 195 54.9
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 3.3e-54 215.7 201 54.7
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 5.6e-54 214.9 197 52.3
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 7.3e-54 214.5 195 57.4
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 3.6e-53 212.2 198 51.5
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 6.2e-53 211.5 194 51.0
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 8.9e-52 207.6 201 51.2
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.2e-51 207.2 196 51.0
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 5.8e-51 204.9 193 52.8
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 1.3e-50 203.8 196 52.0
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 3.7e-50 202.2 175 56.6
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 8.3e-50 201.1 203 52.7
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 3.2e-49 199.1 193 52.8
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 3.2e-49 199.1 196 49.5
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 3.2e-49 199.1 202 51.5
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 5.4e-49 198.4 201 50.7
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 7.1e-49 198.0 196 51.0
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 9.2e-49 197.6 163 56.4
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 1.2e-48 197.2 200 51.0
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 5.8e-43 178.3 197 46.7
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 9.3e-41 171.0 145 57.9
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.7e-40 169.5 160 54.4
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 3.5e-40 169.1 145 56.6
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 3.0e-39 166.0 195 44.1
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 3.9e-39 165.6 188 50.0
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 3.9e-39 165.6 156 55.1
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 5.1e-39 165.2 147 55.1
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 6.6e-39 164.9 193 47.2
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 9.6e-38 161.0 203 38.9
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 6.2e-37 158.3 145 53.1
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 6.2e-37 158.3 148 51.4
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.4e-36 157.1 79 97.5
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 2.7e-32 142.9 203 40.4
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 6.0e-32 141.7 109 58.7
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 8.7e-31 137.9 145 47.6
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.1e-30 137.5 105 58.1
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 2.1e-29 133.3 197 40.6
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 2.6e-27 126.3 117 57.3
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 2.5e-22 109.8 84 65.5
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 2.2e-18 96.7 80 58.8
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 1.6e-16 90.5 87 50.6
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.8e-15 87.0 87 48.3
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.3e-14 82.4 142 36.6
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.3e-13 80.9 64 53.1
TPR.G10161 Trifolium pratense HOM05D003673 ORTHO05D004764 2.1e-13 80.1 52 69.2
CARHR006190 Cardamine hirsuta HOM05D003673 ORTHO05D004764 2.8e-13 79.7 56 64.3
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 8.2e-13 78.2 69 56.5
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 4.1e-12 75.9 75 49.3
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.3e-10 70.9 71 46.5
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 1.6e-08 63.9 146 34.2
Lj8C8T3 Lonicera japonica HOM05D003673 ORTHO05D004764 3.3e-06 56.2 38 65.8


User provided reference genes

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