Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038892 Chenopodium quinoa HOM05D000546 ORTHO05D000398 1.7e-99 366.7 306 100.0
AUR62023041 Chenopodium quinoa HOM05D000546 ORTHO05D000398 1.6e-57 227.3 219 100.0
AUR62038891 Chenopodium quinoa HOM05D000546 ORTHO05D000398 1.6e-57 227.3 219 100.0
AUR62044343 Chenopodium quinoa HOM05D000546 ORTHO05D000398 1.6e-57 227.3 219 100.0
AUR62020629 Chenopodium quinoa HOM05D000546 ORTHO05D000398 1.9e-37 160.6 196 95.4
AUR62038754 Chenopodium quinoa HOM05D000546 ORTHO05D000398 8.0e-36 155.2 196 93.9
BcaC04g22399 Brassica carinata HOM05D000546 ORTHO05D000398 3.5e-23 113.2 176 75.0
A09p16260 Brassica napus HOM05D000546 ORTHO05D000398 3.5e-23 113.2 176 75.0
C09p19770 Brassica napus HOM05D000546 ORTHO05D000398 3.5e-23 113.2 176 75.0
BolC9t54879H Brassica oleracea HOM05D000546 ORTHO05D000398 3.5e-23 113.2 176 75.0
BraA09t37264Z Brassica rapa HOM05D000546 ORTHO05D000398 3.5e-23 113.2 176 75.0
Lsat_1_v5_gn_7_56981 Lactuca sativa HOM05D000546 ORTHO05D000398 1.0e-22 111.7 180 77.8
Aa31LG2G140 Aethionema arabicum HOM05D000546 ORTHO05D000398 1.9e-21 107.5 176 75.6
Carub.0002s0252 Capsella rubella HOM05D000546 ORTHO05D000398 1.9e-21 107.5 176 73.9
C08p15150 Brassica napus HOM05D000546 ORTHO05D000398 3.2e-21 106.7 180 75.0
BolC8t49145H Brassica oleracea HOM05D000546 ORTHO05D000398 3.2e-21 106.7 180 75.0
Sc09g0007910 Simmondsia chinensis HOM05D000546 ORTHO05D000398 3.2e-21 106.7 178 76.4
A08p33060 Brassica napus HOM05D000546 ORTHO05D000398 1.2e-20 104.8 180 74.4
BraA08t35226Z Brassica rapa HOM05D000546 ORTHO05D000398 1.2e-20 104.8 180 74.4
Duzib170G0570 Durio zibethinus HOM05D000546 ORTHO05D000398 1.2e-20 104.8 164 76.8
Thhalv10006975m.g Eutrema salsugineum HOM05D000546 ORTHO05D000398 3.6e-20 103.2 180 74.4
BcaC07g41752 Brassica carinata HOM05D000546 ORTHO05D000398 4.7e-20 102.8 180 73.9
C08p47750 Brassica napus HOM05D000546 ORTHO05D000398 4.7e-20 102.8 180 73.9
Lsat_1_v5_gn_8_69601 Lactuca sativa HOM05D000546 ORTHO05D000398 8.0e-20 102.1 169 75.1
HanXRQChr03g0068311 Helianthus annuus HOM05D000546 ORTHO05D000398 1.0e-19 101.7 179 77.1
Thecc.09G202500 Theobroma cacao HOM05D000546 ORTHO05D000398 1.0e-19 101.7 164 76.2
THA.LOC104809473 Tarenaya hassleriana HOM05D000546 ORTHO05D000398 1.4e-19 101.3 176 73.9
COL.COLO4_04156 Corchorus olitorius HOM05D000546 ORTHO05D000398 1.8e-19 100.9 165 77.6
Nitab4.5_0002577g0070 Nicotiana tabacum HOM05D000546 ORTHO05D000398 1.8e-19 100.9 181 72.4
ECA236G1787 Erigeron canadensis HOM05D000546 ORTHO05D000398 3.0e-19 100.1 182 70.9
BolC8t52312H Brassica oleracea HOM05D000546 ORTHO05D000398 4.0e-19 99.8 180 72.8
BcaB08g37433 Brassica carinata HOM05D000546 ORTHO05D000398 5.2e-19 99.4 174 74.7
BcaC07g41736 Brassica carinata HOM05D000546 ORTHO05D000398 5.2e-19 99.4 174 74.7
BraA09t41759Z Brassica rapa HOM05D000546 ORTHO05D000398 5.2e-19 99.4 180 72.8
A09p64130 Brassica napus HOM05D000546 ORTHO05D000398 6.8e-19 99.0 180 72.8
Ciclev10010678m.g Citrus clementina HOM05D000546 ORTHO05D000398 6.8e-19 99.0 167 74.3
Duzib168G1315 Durio zibethinus HOM05D000546 ORTHO05D000398 6.8e-19 99.0 164 73.8
Peaxi162Scf00025g00291 Petunia axillaris HOM05D000546 ORTHO05D000398 6.8e-19 99.0 164 76.2
AT1G62440 Arabidopsis thaliana HOM05D000546 ORTHO05D000398 8.8e-19 98.6 174 73.6
Nitab4.5_0002138g0120 Nicotiana tabacum HOM05D000546 ORTHO05D000398 8.8e-19 98.6 181 64.6
BraA06t24130Z Brassica rapa HOM05D000546 ORTHO05D000398 1.2e-18 98.2 180 75.0
BolC5t29860H Brassica oleracea HOM05D000546 ORTHO05D000398 1.5e-18 97.8 180 75.6
CANSAT80G1641 Cannabis sativa HOM05D000546 ORTHO05D000398 2.0e-18 97.4 174 71.8
Gohir.D04G008000 Gossypium hirsutum HOM05D000546 ORTHO05D000398 2.0e-18 97.4 164 76.8
Gorai.012G009700 Gossypium raimondii HOM05D000546 ORTHO05D000398 2.6e-18 97.1 164 76.8
BcaC05g25228 Brassica carinata HOM05D000546 ORTHO05D000398 3.4e-18 96.7 180 61.7
Aa31LG1G2690 Aethionema arabicum HOM05D000546 ORTHO05D000398 4.4e-18 96.3 174 73.6
PSO063G6047 Papaver somniferum HOM05D000546 ORTHO05D000398 4.4e-18 96.3 173 76.3
Haze_21241 Corylus avellana HOM05D000546 ORTHO05D000398 5.7e-18 95.9 184 71.2
PGR142G2671 Punica granatum HOM05D000546 ORTHO05D000398 5.7e-18 95.9 203 68.5
QL11p005692 Quercus lobata HOM05D000546 ORTHO05D000398 7.5e-18 95.5 188 67.6
PGSC0003DMG400006027 Solanum tuberosum HOM05D000546 ORTHO05D000398 7.5e-18 95.5 178 72.5
A06p09450 Brassica napus HOM05D000546 ORTHO05D000398 2.2e-17 94.0 180 74.4
C05p11120 Brassica napus HOM05D000546 ORTHO05D000398 2.2e-17 94.0 164 64.6
CSS0000017 Camellia sinensis var. sinensis HOM05D000546 ORTHO05D000398 3.7e-17 93.2 165 73.9
CSS0004982 Camellia sinensis var. sinensis HOM05D000546 ORTHO05D000398 3.7e-17 93.2 165 73.9
TAR636G2569 Trochodendron aralioides HOM05D000546 ORTHO05D000398 4.9e-17 92.8 164 77.4
EL10Ac2g03717 Beta vulgaris HOM05D000546 ORTHO05D000398 8.3e-17 92.0 164 78.0
Gohir.A05G407600 Gossypium hirsutum HOM05D000546 ORTHO05D000398 8.3e-17 92.0 164 75.6
Solyc11g005150.3 Solanum lycopersicum HOM05D000546 ORTHO05D000398 8.3e-17 92.0 178 71.3
Sopen11g001150 Solanum pennellii HOM05D000546 ORTHO05D000398 8.3e-17 92.0 178 71.3
Oeu021236.1 Olea europaea HOM05D000546 ORTHO05D000398 1.1e-16 91.7 164 75.6
PSO170G3441 Papaver somniferum HOM05D000546 ORTHO05D000398 1.1e-16 91.7 167 77.2
Potri.018G151000 Populus trichocarpa HOM05D000546 ORTHO05D000398 1.1e-16 91.7 164 76.8
AL2G13430 Arabidopsis lyrata HOM05D000546 ORTHO05D000398 2.4e-16 90.5 162 74.7
Cfa012871 Carpinus fangiana HOM05D000546 ORTHO05D000398 2.4e-16 90.5 176 72.2
CAN.G341.9 Capsicum annuum HOM05D000546 ORTHO05D000398 7.0e-16 89.0 178 70.8
Sp2g02160 Schrenkiella parvula HOM05D000546 ORTHO05D000398 7.0e-16 89.0 162 74.7
BcaB07g31327 Brassica carinata HOM05D000546 ORTHO05D000398 1.2e-15 88.2 164 73.8
Ah.11g043930 Amaranthus hybridus HOM05D000546 ORTHO05D000398 3.5e-15 86.7 154 79.9
Thhalv10023291m.g Eutrema salsugineum HOM05D000546 ORTHO05D000398 3.5e-15 86.7 160 75.0
MD04G1000500 Malus domestica HOM05D000546 ORTHO05D000398 7.7e-15 85.5 165 75.8
Sp1g10710 Schrenkiella parvula HOM05D000546 ORTHO05D000398 1.7e-14 84.3 163 76.7
AL1G23280 Arabidopsis lyrata HOM05D000546 ORTHO05D000398 6.6e-14 82.4 169 72.8
AT1G12040 Arabidopsis thaliana HOM05D000546 ORTHO05D000398 5.5e-13 79.3 169 71.6
Actinidia02532 Actinidia chinensis HOM05D000546 ORTHO05D000398 1.2e-12 78.2 165 64.8
DCAR_009037 Daucus carota HOM05D000546 ORTHO05D000398 1.6e-12 77.8 148 77.7
TAR362G1258 Trochodendron aralioides HOM05D000546 ORTHO05D000398 1.4e-11 74.7 162 59.9
Sabra06G0061300 Salix brachista HOM05D000546 ORTHO05D000398 2.3e-11 73.9 184 65.8
Potri.006G081200 Populus trichocarpa HOM05D000546 ORTHO05D000398 5.2e-11 72.8 148 77.7
Hma1.2p1_0394F.1_g143300 Hydrangea macrophylla HOM05D000546 ORTHO05D000398 2.0e-10 70.9 174 69.5
ECA240G4728 Erigeron canadensis HOM05D000546 ORTHO05D000398 3.4e-10 70.1 172 69.8
SEGI_22093 Sequoiadendron giganteum HOM05D000546 ORTHO05D000398 3.4e-10 70.1 175 62.3
Carub.0003s2292 Capsella rubella HOM05D000546 ORTHO05D000398 7.5e-10 68.9 165 61.8
Oeu000269.1 Olea europaea HOM05D000546 ORTHO05D000398 7.5e-10 68.9 179 68.2
Cfa018485 Carpinus fangiana HOM05D000546 ORTHO05D000398 1.3e-09 68.2 163 66.9
Dinv26499 Davidia involucrata HOM05D000546 ORTHO05D000398 1.3e-09 68.2 63 74.6
TWI09G0453 Tripterygium wilfordii HOM05D000546 ORTHO05D000398 1.3e-09 68.2 181 53.6
Actinidia40124 Actinidia chinensis HOM05D001851 ORTHO05D002237 2.9e-09 67.0 163 69.9
Gohir.A01G118000 Gossypium hirsutum HOM05D000546 ORTHO05D000398 3.7e-09 66.6 163 54.6
Gorai.002G130500 Gossypium raimondii HOM05D000546 ORTHO05D000398 3.7e-09 66.6 163 54.6
Sed0007532 Sechium edule HOM05D000546 ORTHO05D000398 3.7e-09 66.6 168 60.1
AT3G22800 Arabidopsis thaliana HOM05D000546 ORTHO05D000398 4.9e-09 66.2 165 61.2
BcaB02g06432 Brassica carinata HOM05D000546 ORTHO05D000398 6.3e-09 65.9 63 81.0
CSS0049017 Camellia sinensis var. sinensis HOM05D000546 ORTHO05D000398 6.3e-09 65.9 163 68.7
PSO170G0042 Papaver somniferum HOM05D000546 ORTHO05D000398 6.3e-09 65.9 172 68.6
PSO210G2110 Papaver somniferum HOM05D000546 ORTHO05D000398 8.3e-09 65.5 172 68.6
Carub.0001s1172 Capsella rubella HOM05D000546 ORTHO05D000398 1.1e-08 65.1 158 72.8
Nn1g02411 Nelumbo nucifera HOM05D000546 ORTHO05D000398 1.1e-08 65.1 164 51.8
Sed0006716 Sechium edule HOM05D000546 ORTHO05D000398 1.1e-08 65.1 176 58.0
Zm00001eb283750 Zea mays HOM05D000546 ORTHO05D000398 1.1e-08 65.1 183 54.1
Haze_17588 Corylus avellana HOM05D000546 ORTHO05D000398 1.4e-08 64.7 163 66.3
Glyma.10G245100 Glycine max HOM05D000546 ORTHO05D000398 2.4e-08 63.9 163 66.3
Migut.J00864 Erythranthe guttata HOM05D000546 ORTHO05D000398 3.2e-08 63.5 148 75.0
CARHR012400 Cardamine hirsuta HOM05D000546 ORTHO05D000398 4.1e-08 63.2 163 69.9
Duzib093G0901 Durio zibethinus HOM05D000546 ORTHO05D000398 4.1e-08 63.2 164 65.2
Sp3g20500 Schrenkiella parvula HOM05D000546 ORTHO05D000398 4.1e-08 63.2 165 58.2
CiPaw.01G197000 Carya illinoinensis HOM05D000546 ORTHO05D000398 5.4e-08 62.8 166 68.7
Gohir.D01G106366 Gossypium hirsutum HOM05D000546 ORTHO05D000398 5.4e-08 62.8 163 30.1
Nitab4.5_0003249g0040 Nicotiana tabacum HOM05D000546 ORTHO05D000398 5.4e-08 62.8 165 61.8
Sc14g0001680 Simmondsia chinensis HOM05D000546 ORTHO05D000398 5.4e-08 62.8 164 55.5
AL3G37120 Arabidopsis lyrata HOM05D000546 ORTHO05D000398 7.0e-08 62.4 165 60.0
CDE03G0377 Ceratophyllum demersum HOM05D000546 ORTHO05D000398 7.0e-08 62.4 201 52.7
Thhalv10022219m.g Eutrema salsugineum HOM05D000546 ORTHO05D000398 7.0e-08 62.4 165 59.4
Nitab4.5_0000085g0040 Nicotiana tabacum HOM05D000546 ORTHO05D000398 9.2e-08 62.0 165 58.2
Os01g0594300 Oryza sativa ssp. japonica HOM05D000546 ORTHO05D000398 9.2e-08 62.0 174 55.2
Peaxi162Scf00520g00051 Petunia axillaris HOM05D000546 ORTHO05D000398 9.2e-08 62.0 165 69.7
FAN20G0453 Fragaria x ananassa HOM05D000546 ORTHO05D000398 1.2e-07 61.6 63 55.6
ATR0665G555 Amborella trichopoda HOM05D000546 ORTHO05D000398 2.0e-07 60.8 62 72.6
CARHR098640 Cardamine hirsuta HOM05D000546 ORTHO05D000398 2.0e-07 60.8 165 58.8
Lj7P646T19 Lonicera japonica HOM05D000546 ORTHO05D000398 2.0e-07 60.8 174 64.9
Aa31LG8G9290 Aethionema arabicum HOM05D000546 ORTHO05D000398 2.7e-07 60.5 164 66.5
Sabra06G0192200 Salix brachista HOM05D000546 ORTHO05D000398 2.7e-07 60.5 174 63.8
Lsat_1_v5_gn_2_117961 Lactuca sativa HOM05D000546 ORTHO05D000398 3.5e-07 60.1 182 54.9
Manes.16G068900 Manihot esculenta HOM05D000546 ORTHO05D000398 3.5e-07 60.1 184 54.9
TWI32G0480 Tripterygium wilfordii HOM05D000546 ORTHO05D000398 3.5e-07 60.1 182 52.2
CAN.G1402.10 Capsicum annuum HOM05D000546 ORTHO05D000398 4.6e-07 59.7 165 60.6
THA.LOC104824543 Tarenaya hassleriana HOM05D000546 ORTHO05D000398 4.6e-07 59.7 167 41.9
MBI11_g36341_MAGBIO Magnolia biondii HOM05D000546 ORTHO05D000398 5.9e-07 59.3 63 71.4
BcaB06g26396 Brassica carinata HOM05D000546 ORTHO05D000398 7.8e-07 58.9 165 54.5
Thecc.04G236900 Theobroma cacao HOM05D000546 ORTHO05D000398 7.8e-07 58.9 164 63.4
Nn5g26950 Nelumbo nucifera HOM05D000546 ORTHO05D000398 1.0e-06 58.5 152 61.8
Nn8g39237 Nelumbo nucifera HOM05D000546 ORTHO05D000398 1.0e-06 58.5 172 61.6
Manes.18G143800 Manihot esculenta HOM05D000546 ORTHO05D000398 1.3e-06 58.2 140 77.9
Psat6g205760 Pisum sativum HOM05D000546 ORTHO05D000398 1.3e-06 58.2 62 67.7
Os03g0795300 Oryza sativa ssp. japonica HOM05D000546 ORTHO05D000398 1.7e-06 57.8 165 57.6
Potri.018G035100 Populus trichocarpa HOM05D000546 ORTHO05D000398 1.7e-06 57.8 173 57.2
Zm00001eb161110 Zea mays HOM05D000546 ORTHO05D000398 1.7e-06 57.8 62 45.2
BraA05t21478Z Brassica rapa HOM05D000546 ORTHO05D000398 2.3e-06 57.4 165 53.3
BcaB04g20500 Brassica carinata HOM05D000546 ORTHO05D000398 2.9e-06 57.0 165 53.9
BcaC09g49198 Brassica carinata HOM05D000546 ORTHO05D000398 2.9e-06 57.0 165 53.9
A01p32420 Brassica napus HOM05D000546 ORTHO05D000398 2.9e-06 57.0 165 53.9
A05p25920 Brassica napus HOM05D000546 ORTHO05D000398 2.9e-06 57.0 165 53.3
C01p41500 Brassica napus HOM05D000546 ORTHO05D000398 2.9e-06 57.0 165 53.9
BolC1t04106H Brassica oleracea HOM05D000546 ORTHO05D000398 2.9e-06 57.0 165 53.9
CDE05G0421 Ceratophyllum demersum HOM05D000546 ORTHO05D000398 2.9e-06 57.0 163 36.2
CDE06G1824 Ceratophyllum demersum HOM05D000546 ORTHO05D000398 2.9e-06 57.0 63 65.1
Potri.006G245600 Populus trichocarpa HOM05D000546 ORTHO05D000398 2.9e-06 57.0 173 57.2
Sabra10G0059900 Salix brachista HOM05D000546 ORTHO05D000398 2.9e-06 57.0 164 59.1
HPP92_018609 Vanilla planifolia HOM05D000546 ORTHO05D000398 2.9e-06 57.0 168 60.7
BcaC05g28014 Brassica carinata HOM05D000546 ORTHO05D000398 3.9e-06 56.6 165 51.5
C05p40300 Brassica napus HOM05D000546 ORTHO05D000398 3.9e-06 56.6 165 51.5
BolC5t32771H Brassica oleracea HOM05D000546 ORTHO05D000398 3.9e-06 56.6 165 51.5
Solyc09g082530.3 Solanum lycopersicum HOM05D000546 ORTHO05D000398 3.9e-06 56.6 165 67.3
Sopen09g031390 Solanum pennellii HOM05D000546 ORTHO05D000398 3.9e-06 56.6 165 67.9
TWI34G1685 Tripterygium wilfordii HOM05D000546 ORTHO05D000398 3.9e-06 56.6 141 75.9
BraA01t03368Z Brassica rapa HOM05D000546 ORTHO05D000398 5.0e-06 56.2 165 53.9
CARHR098650 Cardamine hirsuta HOM05D000546 ORTHO05D000398 6.6e-06 55.8 169 58.0
Oeu000953.1 Olea europaea HOM05D000546 ORTHO05D000398 6.6e-06 55.8 140 69.3
vmacro20728 Vaccinium macrocarpon HOM05D000546 ORTHO05D000398 6.6e-06 55.8 164 67.7
Zm00001eb337150 Zea mays HOM05D000546 ORTHO05D000398 6.6e-06 55.8 62 43.5
Cc06_g23480 Coffea canephora HOM05D000546 ORTHO05D000398 8.6e-06 55.5 141 74.5
Zm00001eb213010 Zea mays HOM05D000546 ORTHO05D000398 8.6e-06 55.5 177 54.2


User provided reference genes

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