Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 4.4e-124 448.0 229 100.0
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.7e-110 401.7 239 88.7
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 2.8e-70 269.2 183 77.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 6.3e-70 268.1 182 77.5
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.2e-63 247.3 172 73.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 2.2e-62 243.0 172 72.1
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 2.2e-62 243.0 172 72.1
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.7e-57 226.1 172 66.3
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.7e-57 226.1 172 66.3
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 8.0e-57 224.6 172 65.7
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 8.0e-57 224.6 172 65.7
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-56 223.8 172 65.7
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 2.3e-56 223.0 172 65.7
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.8e-53 213.4 242 50.4
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 5.4e-53 211.8 171 59.6
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 3.5e-52 209.1 247 51.4
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 7.7e-52 208.0 135 72.6
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.0e-51 207.6 176 63.1
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.3e-51 207.2 180 61.1
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 2.9e-51 206.1 160 62.5
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 3.8e-51 205.7 158 63.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 8.6e-51 204.5 172 59.9
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 8.6e-51 204.5 120 80.8
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.1e-50 204.1 158 61.4
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 5.5e-50 201.8 128 74.2
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 9.5e-50 201.1 158 64.6
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.2e-49 200.7 158 60.1
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 3.6e-49 199.1 160 63.8
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 6.1e-49 198.4 158 59.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 2.3e-48 196.4 172 57.0
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.0e-48 196.1 160 61.9
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.0e-48 196.1 160 61.9
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.0e-48 196.1 125 72.8
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 4.0e-48 195.7 122 74.6
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 6.8e-48 194.9 178 55.6
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.2e-47 194.1 131 72.5
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.5e-47 193.7 166 56.6
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 5.7e-47 191.8 181 55.8
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 7.5e-47 191.4 125 72.0
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 9.8e-47 191.0 160 59.4
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.3e-46 190.7 157 62.4
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.8e-46 189.5 197 54.3
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 3.7e-46 189.1 128 67.2
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 4.9e-46 188.7 164 58.5
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 8.3e-46 188.0 121 73.6
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.1e-45 187.6 165 58.2
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.4e-45 187.2 183 55.7
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.4e-45 186.4 218 48.2
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 2.4e-45 186.4 178 53.9
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.1e-45 185.7 183 55.7
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 5.4e-45 185.3 186 55.4
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 7.0e-45 184.9 130 70.8
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 7.0e-45 184.9 160 57.5
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.2e-44 184.1 179 56.4
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 1.6e-44 183.7 126 68.3
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.0e-44 183.3 159 59.7
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 2.7e-44 183.0 123 69.9
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.7e-44 183.0 131 68.7
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.7e-44 183.0 131 68.7
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 3.5e-44 182.6 156 61.5
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.9e-44 181.8 183 55.2
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.3e-43 180.6 151 60.9
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.9e-43 179.5 123 69.1
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 6.6e-43 178.3 166 56.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 1.5e-42 177.2 172 55.2
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 4.3e-42 175.6 178 57.3
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 4.3e-42 175.6 178 57.3
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 5.6e-42 175.3 160 55.6
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 5.6e-42 175.3 258 46.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 7.3e-42 174.9 122 71.3
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 9.5e-42 174.5 162 56.2
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.2e-41 174.1 163 52.8
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 1.6e-41 173.7 162 56.2
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 3.6e-41 172.6 164 52.4
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 3.6e-41 172.6 164 52.4
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 6.1e-41 171.8 164 52.4
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 6.1e-41 171.8 164 52.4
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 6.1e-41 171.8 164 52.4
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 8.0e-41 171.4 162 54.9
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.0e-40 171.0 123 67.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.0e-40 171.0 129 65.9
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.4e-40 170.6 236 44.5
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.4e-40 170.6 164 51.8
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.4e-40 170.6 130 62.3
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.8e-40 170.2 163 52.1
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.8e-40 170.2 177 49.7
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 4.0e-40 169.1 173 50.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 6.8e-40 168.3 186 48.9
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.5e-39 167.2 124 69.4
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.6e-39 166.4 93 82.8
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 3.7e-38 162.5 147 54.4
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.1e-37 161.0 131 61.1
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 5.4e-37 158.7 131 60.3
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 5.4e-37 158.7 131 60.3
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 5.4e-37 158.7 235 44.3
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 2.7e-36 156.4 172 48.8
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 3.5e-36 156.0 132 59.1
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.0e-35 152.9 140 53.6
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 3.9e-35 152.5 152 52.6
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 5.6e-34 148.7 229 41.5
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 7.3e-34 148.3 122 57.4
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.8e-33 146.4 225 40.9
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 4.7e-33 145.6 142 59.2
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 4.0e-32 142.5 151 53.0
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 5.2e-32 142.1 110 65.5
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.2e-31 141.0 160 52.5
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-30 137.5 122 54.9
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 6.4e-30 135.2 102 59.8
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.1e-29 134.4 95 70.5
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.9e-29 133.7 101 66.3
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.9e-29 133.7 81 79.0
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 2.4e-29 133.3 104 59.6
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-27 127.9 120 54.2
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 4.4e-23 112.5 80 60.0
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.3e-22 110.9 69 81.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 8.3e-22 108.2 77 67.5
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.5e-20 102.8 112 54.5
AUR62037821 Chenopodium quinoa HOM05D002681 ORTHO05D003372 2.8e-17 93.2 85 67.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 8.1e-17 91.7 69 62.3
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 3.2e-13 79.7 128 39.8
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 3.5e-12 76.3 123 38.2
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.3e-09 67.8 63 52.4
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.3e-09 67.8 63 52.4
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.3e-09 67.8 105 44.8
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.6e-09 67.4 63 52.4
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 4.8e-09 65.9 54 61.1
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 6.2e-09 65.5 63 50.8
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.1e-08 64.7 121 39.7
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 3.1e-08 63.2 46 56.5
Ah.02g128810 Amaranthus hybridus HOM05D002735 ORTHO05D003048 2.0e-07 60.5 72 54.2
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 5.8e-07 58.9 92 44.6
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 7.6e-07 58.5 121 33.9
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 8.4e-06 55.1 121 31.4


User provided reference genes

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