Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 3425.6 1802 100.0
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 3102.0 1834 91.2
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2816.2 1831 81.3
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2697.9 1823 77.7
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2376.3 1871 69.9
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2288.1 1870 66.8
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2279.2 1870 67.0
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2272.7 1857 66.6
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2269.6 1857 65.5
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2268.0 1874 65.5
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2241.5 1853 66.8
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2238.0 1860 66.0
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2235.7 1873 66.0
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2229.9 1749 69.1
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2226.4 1869 66.7
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2225.7 1872 65.2
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2225.3 1855 66.4
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2224.1 1862 65.5
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2222.6 1868 65.5
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2221.8 1861 65.8
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2219.5 1863 65.2
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2214.5 1857 64.9
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2214.1 1869 66.1
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2203.7 1897 65.1
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2203.3 1873 65.6
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2201.8 1869 64.8
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2197.2 1863 64.6
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2196.4 1871 64.0
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2194.5 1853 65.6
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2192.5 1871 64.8
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2186.4 1872 63.4
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2185.6 1872 64.7
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2185.2 1857 65.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2184.5 1872 64.6
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2178.3 1898 64.2
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2177.5 1848 64.6
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2172.9 1863 64.7
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2148.2 1723 67.4
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2145.2 1858 62.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2144.8 1854 64.7
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2138.6 1985 61.1
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2138.6 1836 65.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2137.1 1930 64.2
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2135.5 1854 62.8
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2130.5 1849 64.6
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2125.9 1850 62.9
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2121.7 1854 63.6
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2113.6 1852 64.1
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2104.7 2079 58.3
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2100.9 1709 68.1
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2087.8 1856 63.4
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2085.8 1866 62.0
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2085.5 1849 63.6
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2080.1 1866 61.8
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2078.9 1848 63.3
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2074.3 1852 62.3
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2069.7 1832 63.0
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2061.2 1838 63.4
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2056.2 2068 58.7
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2054.6 1875 61.4
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2053.1 1696 66.5
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2026.1 1859 60.7
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2017.3 1877 61.7
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2010.3 1883 60.6
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1997.2 1838 61.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1994.2 1838 62.2
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1989.5 1848 62.0
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1989.5 1885 60.9
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1988.8 1849 62.3
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1983.0 1838 62.0
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1982.6 1883 60.9
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1980.7 1934 59.7
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1978.4 1846 59.6
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1976.4 1844 59.3
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1976.4 1889 60.6
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 1975.7 2210 52.6
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1973.4 1848 60.4
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1972.2 1747 63.4
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1963.0 1838 60.6
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1953.7 1888 60.4
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1942.2 1863 61.3
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1939.5 1936 56.9
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1934.8 1848 59.6
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1929.1 1864 58.4
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1924.4 1928 59.3
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1887.1 1370 71.3
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1874.8 1847 59.7
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1807.0 1486 66.9
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1711.0 1459 66.0
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1708.0 1831 54.1
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1703.0 1947 52.3
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1696.4 1943 51.9
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1648.6 1757 52.8
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1517.3 1078 74.9
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1512.3 1784 53.3
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1494.2 1827 49.8
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1361.3 947 73.4
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1307.7 1171 64.3
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1277.3 1437 53.2
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1276.2 1207 60.1
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1258.8 1233 59.7
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1196.8 1170 60.0
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1123.2 846 68.9
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1106.3 952 63.0
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 3.8e-295 1019.2 1287 44.9
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.8e-281 973.8 1098 56.8
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.9e-279 966.5 1055 57.7
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 2.3e-268 930.2 694 70.0
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 6.3e-258 895.6 683 68.2
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.7e-215 754.6 924 55.7
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 6.6e-215 752.7 1313 37.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.0e-207 728.8 1069 43.7
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.9e-198 698.0 832 55.4
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 2.5e-198 697.6 445 78.9
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.3e-154 552.4 1260 32.3
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 1.2e-139 502.7 380 68.9
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.5e-139 501.1 379 67.8
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 8.6e-130 469.9 378 65.1
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.5e-118 430.3 379 60.9
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.8e-96 358.6 523 44.9
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 3.2e-92 345.1 214 76.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 5.4e-92 344.4 286 62.6
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.9e-89 335.9 294 60.5
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.5e-84 317.8 237 70.9
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 9.3e-84 317.0 1099 26.9
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-81 309.3 260 65.4
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.2e-77 295.8 209 70.8
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.4e-76 293.1 1744 24.5
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 2.3e-66 259.2 472 43.9
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.8e-63 249.6 516 38.2
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 4.2e-60 238.4 224 59.4
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 4.7e-59 235.0 264 51.1
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.5e-54 219.9 174 66.7
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.0e-53 217.2 243 51.9
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.4e-49 201.8 245 47.8
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.7e-48 199.9 188 59.0
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.0e-47 194.5 277 45.5
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.6e-46 193.4 184 57.1
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 2.0e-46 193.0 170 60.0
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.8e-40 171.8 397 36.8
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.1e-39 169.1 220 48.6
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 9.4e-36 157.5 106 72.6
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 6.1e-35 154.8 89 78.7
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 4.8e-32 145.2 167 49.1
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 2.8e-27 129.4 108 66.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 7.5e-25 121.3 107 63.6
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 1.7e-24 120.2 75 78.7
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.2e-22 114.0 87 64.4
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 3.5e-22 112.5 69 79.7
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 7.3e-20 104.8 68 75.0
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 2.8e-19 102.8 75 73.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.5e-17 97.1 76 68.4
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 3.4e-17 95.9 72 68.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.8e-17 95.1 76 60.5
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 7.5e-17 94.7 136 45.6
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 7.5e-17 94.7 54 85.2
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 7.5e-17 94.7 54 85.2
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 3.7e-16 92.4 54 83.3
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 3.5e-14 85.9 164 38.4
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.9e-13 82.4 56 71.4
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 3.3e-12 79.3 36 94.4
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 3.3e-12 79.3 41 87.8
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.6e-11 77.0 100 43.0
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 2.8e-11 76.3 48 85.4
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 4.7e-11 75.5 89 44.9
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.0e-09 70.1 73 57.5
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 4.4e-09 68.9 81 51.9
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 9.8e-09 67.8 107 42.1
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.2e-08 66.6 74 50.0
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 4.6e-06 58.9 68 45.6
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 7.8e-06 58.2 55 54.5


User provided reference genes

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