Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.3e-200 701.4 336 100.0
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 3.2e-131 472.2 334 68.6
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 5.5e-131 471.5 355 65.4
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 3.4e-96 355.9 335 51.0
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 4.1e-94 349.0 334 50.3
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.8e-90 336.3 333 50.2
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 6.8e-89 331.6 336 48.5
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 3.4e-88 329.3 334 48.8
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.4e-88 328.9 334 48.2
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.7e-87 327.0 334 48.2
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 3.7e-87 325.9 334 48.5
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 8.3e-87 324.7 334 47.0
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 9.2e-86 321.2 334 47.6
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.3e-84 317.4 335 46.3
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.7e-84 317.0 334 46.4
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.7e-84 317.0 334 45.8
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.7e-84 317.0 334 45.8
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.3e-84 316.6 333 46.5
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.1e-84 315.5 316 48.1
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 6.6e-84 315.1 334 44.6
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.5e-83 313.2 332 47.6
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 6.2e-82 308.5 333 46.8
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 5.2e-81 305.4 334 44.9
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 6.8e-81 305.1 337 47.5
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 6.8e-81 305.1 144 95.8
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.2e-80 304.3 333 47.1
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.4e-80 302.4 333 47.4
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 5.8e-80 302.0 334 43.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 9.9e-80 301.2 334 43.7
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.1e-78 297.7 334 42.8
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.4e-78 297.4 334 44.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 9.2e-78 294.7 333 42.3
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 2.7e-77 293.1 336 42.0
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.3e-76 290.0 323 45.5
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.9e-76 289.3 338 45.0
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 5.1e-76 288.9 334 44.3
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.3e-75 286.2 334 44.3
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 5.6e-75 285.4 334 43.4
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.5e-75 284.6 178 77.0
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 9.5e-75 284.6 334 44.3
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.6e-74 283.9 334 42.2
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 2.1e-74 283.5 333 42.9
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 6.2e-74 282.0 333 41.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 6.2e-74 282.0 333 43.8
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 1.1e-73 281.2 334 41.9
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 6.8e-73 278.5 333 42.3
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 2.0e-72 276.9 333 41.7
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 5.8e-72 275.4 335 43.3
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 5.8e-72 275.4 336 43.2
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 1.3e-71 274.2 333 42.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 3.2e-70 269.6 340 42.1
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 7.1e-70 268.5 338 44.4
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 4.6e-69 265.8 339 43.4
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.0e-68 264.6 335 42.1
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 2.8e-66 256.5 334 41.0
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.4e-65 254.2 322 40.4
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.4e-65 254.2 334 39.8
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.8e-65 253.8 334 40.4
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 3.1e-65 253.1 334 41.3
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 5.3e-65 252.3 335 40.6
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 5.3e-65 252.3 335 39.4
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.9e-65 251.9 334 40.1
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 6.9e-65 251.9 334 40.1
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.2e-64 251.1 333 41.1
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 3.4e-64 249.6 335 40.3
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.6e-64 248.4 336 39.9
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.3e-63 247.7 336 40.2
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 2.9e-63 246.5 334 39.8
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.4e-62 244.2 315 41.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.9e-62 243.8 342 38.6
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 3.2e-62 243.0 334 38.9
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 1.6e-61 240.7 338 41.1
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.0e-61 238.8 343 38.5
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 4.8e-58 229.2 334 36.5
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 4.0e-57 226.1 335 38.2
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 6.9e-57 225.3 338 37.3
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.6e-56 223.4 335 37.9
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.6e-56 223.4 344 39.0
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 4.9e-55 219.2 334 35.6
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 4.2e-54 216.1 331 38.7
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 7.9e-53 211.8 331 39.3
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.9e-53 211.8 331 39.3
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 7.9e-53 211.8 335 36.7
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.3e-52 210.3 335 38.2
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.9e-52 209.5 331 39.3
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 5.1e-52 209.1 335 36.4
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.1e-52 209.1 331 39.0
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.1e-51 208.0 335 37.3
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.3e-51 206.1 291 36.4
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 4.3e-51 206.1 338 37.0
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.6e-50 204.1 336 37.2
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 2.1e-50 203.8 336 36.0
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.8e-50 203.4 332 38.6
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 4.8e-50 202.6 335 37.0
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.1e-49 201.4 334 36.5
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.8e-49 200.7 266 41.4
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.0e-49 199.5 336 37.2
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 9.0e-49 198.4 347 34.0
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 9.0e-49 198.4 347 34.0
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 7.6e-48 195.3 334 35.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 7.6e-48 195.3 335 35.8
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.0e-47 194.9 336 35.4
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.8e-47 193.0 313 36.7
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 8.4e-47 191.8 334 35.0
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.1e-46 191.4 332 33.7
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.1e-46 191.4 334 35.3
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.4e-46 191.0 332 34.0
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.9e-46 190.7 336 34.8
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 2.5e-46 190.3 338 35.5
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 4.2e-46 189.5 350 35.7
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.2e-46 189.5 336 34.5
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 7.1e-46 188.7 334 34.1
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 9.3e-46 188.3 334 34.1
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 9.3e-46 188.3 266 39.8
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.2e-45 188.0 331 34.7
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.2e-45 188.0 331 32.9
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.7e-45 186.8 331 32.6
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 2.3e-44 183.7 334 33.8
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 3.9e-44 183.0 335 33.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 5.1e-44 182.6 331 33.5
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.7e-44 182.2 331 32.9
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 6.7e-44 182.2 336 33.0
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.9e-43 180.6 334 34.4
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.9e-43 180.6 334 34.4
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.8e-41 174.1 334 32.6
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.4e-41 173.7 332 33.1
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 3.1e-41 173.3 276 35.9
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.6e-40 170.2 338 32.5
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 2.2e-39 167.2 334 30.5
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 2.5e-38 163.7 334 33.8
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.5e-38 163.7 251 36.7
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 3.2e-38 163.3 356 32.6
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 1.3e-36 157.9 343 31.8
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 3.9e-36 156.4 364 28.8
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 1.1e-35 154.8 341 33.1
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.3e-35 153.3 248 36.7
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 2.8e-34 150.2 310 33.9
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 8.2e-34 148.7 271 34.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 4.5e-32 142.9 343 32.4
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.3e-31 141.4 263 33.8
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.4e-30 137.9 365 28.2
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 3.6e-29 133.3 337 29.7
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 8.2e-26 122.1 139 38.8
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 8.2e-26 122.1 333 27.6
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 9.1e-25 118.6 256 33.2
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 5.9e-24 115.9 130 45.4
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.6e-21 106.7 193 31.6
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 4.4e-19 99.8 112 45.5
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.2e-16 91.7 213 30.5
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 2.2e-15 87.4 112 40.2
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.1e-13 80.9 51 72.5
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.4e-12 78.2 115 36.5
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 3.7e-10 70.1 61 50.8
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 9.1e-09 65.5 109 31.2
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 5.5e-06 56.2 94 37.2


User provided reference genes

Program Settings