Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 2611.3 1492 100.0
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 2486.4 1592 89.8
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 2101.2 1583 75.6
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1904.0 1564 69.1
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1768.8 1528 63.8
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1723.0 1073 78.5
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1645.9 1579 58.1
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1607.8 1550 58.9
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1607.8 1550 58.9
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1606.7 1540 57.3
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1588.5 1544 56.1
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1567.0 1564 55.6
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1563.9 1548 56.0
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1557.7 1516 56.3
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1557.0 1505 58.1
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1555.4 1561 54.3
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1549.3 1396 59.2
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1542.7 1400 67.5
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1535.4 1394 58.5
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1527.3 1391 58.7
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1524.2 1392 61.4
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1523.8 1393 61.0
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1523.5 1393 59.2
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1523.5 1524 55.6
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1521.9 1524 54.4
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1521.1 1515 61.1
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1521.1 1401 60.8
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1519.6 1394 59.6
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1516.9 1524 56.7
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1514.6 1406 57.4
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1510.7 1402 62.1
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1501.9 1537 57.0
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1497.6 1526 56.1
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1497.3 1518 56.4
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1497.3 1530 56.6
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1493.8 1395 59.6
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1493.8 1417 56.7
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1492.2 1394 58.3
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1492.2 1380 58.1
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1490.3 1390 57.0
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1489.9 1395 60.2
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1486.1 1372 56.5
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1486.1 1394 58.5
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1484.5 1343 61.6
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1484.5 1392 60.4
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1480.7 1568 52.6
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1478.0 1396 56.7
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1471.1 1392 58.4
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1470.3 1234 61.6
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1469.9 1034 67.8
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1468.4 1072 67.5
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1467.6 1614 50.2
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1467.2 1399 54.8
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1465.3 1528 52.9
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1461.4 1524 53.0
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1459.5 1046 68.7
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1457.6 1522 54.1
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1445.3 1428 54.7
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1439.5 1403 55.4
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1439.1 1525 53.8
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1438.3 1521 53.1
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1434.1 1520 52.9
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1407.1 1088 64.3
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1378.6 1034 64.8
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1375.5 1397 54.5
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1369.0 1560 52.8
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1358.2 1296 59.3
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 1340.1 1411 51.4
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 1335.5 1366 52.0
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 1334.3 1398 50.9
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 1331.6 1408 51.1
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 1325.1 1513 48.5
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1323.9 1376 53.9
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1323.5 1366 53.6
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 1320.4 1517 48.6
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 1319.7 1414 50.7
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1318.1 1366 51.6
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1316.6 1184 69.3
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 1315.1 1366 51.4
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1307.7 1337 52.7
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 1306.2 1380 50.9
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1302.3 1048 61.2
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 1294.6 1400 50.1
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1293.9 1076 58.8
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1249.2 1341 55.1
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1226.8 817 73.2
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1206.0 861 67.9
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1187.6 1127 53.0
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1175.2 770 73.9
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 0.0e+00 1165.6 1419 46.6
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1137.9 847 64.2
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1137.5 1233 52.9
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1089.3 772 69.7
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 6.1e-307 1058.1 865 62.1
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 2.8e-304 1049.3 1028 52.7
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 7.5e-297 1024.6 1038 51.5
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.6e-291 1006.9 1072 49.3
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 2.7e-262 909.8 909 62.2
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.8e-245 854.0 1004 47.1
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.9e-223 780.8 481 76.5
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 9.7e-212 741.9 820 48.3
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 1.8e-205 721.1 880 54.5
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.3e-184 651.7 812 45.4
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.0e-181 642.1 776 48.5
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 5.0e-176 623.2 488 64.5
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 1.7e-160 571.6 875 43.1
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.7e-160 571.6 500 57.4
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 2.3e-160 571.2 875 43.2
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 4.2e-146 523.9 373 69.2
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 3.4e-140 504.2 308 74.4
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.6e-108 398.3 304 66.1
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 9.4e-106 389.8 327 58.7
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 2.2e-99 368.6 587 44.0
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 8.5e-99 366.7 235 75.7
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.2e-89 336.3 206 76.7
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 1.6e-73 282.7 562 50.7
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 3.6e-73 281.6 565 44.8
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 4.7e-73 281.2 208 63.9
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.0e-72 280.0 229 62.4
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 1.5e-71 276.2 1032 24.9
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 5.7e-71 274.2 728 29.0
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.0e-68 265.8 173 74.0
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 8.9e-56 223.8 753 25.0
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 3.9e-51 208.4 145 66.9
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 8.9e-48 197.2 144 68.1
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 4.1e-45 188.3 115 77.4
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 2.5e-42 179.1 156 64.1
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 2.5e-42 179.1 176 55.1
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 5.6e-42 177.9 131 64.9
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 2.8e-41 175.6 139 61.9
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 4.4e-39 168.3 228 44.7
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 1.9e-37 162.9 104 75.0
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 6.8e-32 144.4 454 35.5
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 5.8e-31 141.4 692 22.8
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 6.4e-30 137.9 158 48.7
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 8.4e-30 137.5 156 48.7
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 4.6e-28 131.7 328 31.7
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 7.8e-28 131.0 85 72.9
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 5.1e-27 128.3 105 56.2
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 1.1e-26 127.1 76 72.4
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 4.3e-26 125.2 79 74.7
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 3.6e-25 122.1 148 48.0
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 1.1e-24 120.6 111 56.8
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.3e-22 113.6 452 30.1
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 3.8e-22 112.1 75 72.0
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 4.9e-22 111.7 80 63.8
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 1.9e-21 109.8 69 75.4
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 1.6e-20 106.7 136 50.0
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 6.0e-20 104.8 117 48.7
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 6.6e-19 101.3 88 54.5
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.6e-17 96.7 64 67.2
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 6.2e-17 94.7 133 42.9
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 4.5e-15 88.6 62 69.4
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 1.4e-13 83.6 46 71.7
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-13 83.6 138 42.0
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 1.9e-13 83.2 68 54.4
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 4.2e-13 82.0 79 53.2
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 1.3e-11 77.0 54 55.6
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 6.7e-11 74.7 90 47.8
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 7.4e-10 71.2 64 57.8
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 7.4e-10 71.2 86 46.5
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 1.4e-08 67.0 81 44.4
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 1.4e-08 67.0 294 21.4
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.8e-08 66.6 48 68.8
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 9.0e-08 64.3 33 81.8
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 4.5e-07 62.0 47 55.3
QL02p000437 Quercus lobata HOM05D002132 ORTHO05D002168 7.6e-07 61.2 200 25.0
Ah.10g034090 Amaranthus hybridus HOM05D002132 ORTHO05D002168 1.7e-06 60.1 334 21.3
Hma1.2p1_1126F.1_g259655 Hydrangea macrophylla HOM05D002132 ORTHO05D002168 1.7e-06 60.1 287 20.6
Lj7A256T44 Lonicera japonica HOM05D002132 ORTHO05D002168 1.7e-06 60.1 321 22.4
unitig_0.g2556 Utricularia gibba HOM05D002132 ORTHO05D002168 4.9e-06 58.5 206 25.7
Actinidia29321 Actinidia chinensis HOM05D002132 ORTHO05D002168 8.4e-06 57.8 315 21.0
HanXRQChr06g0181111 Helianthus annuus HOM05D002132 ORTHO05D002168 8.4e-06 57.8 345 20.0
Zm00001eb240160 Zea mays HOM05D002132 ORTHO05D002168 8.4e-06 57.8 341 19.6


User provided reference genes

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