Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.6e-239 832.4 424 100.0
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.3e-235 818.5 424 97.6
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.4e-187 659.8 425 77.4
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 6.8e-187 657.5 423 77.1
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.9e-184 649.4 425 76.0
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 1.9e-184 649.4 425 75.3
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 2.4e-184 649.0 425 76.7
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.6e-183 646.4 425 75.5
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.6e-183 644.8 425 75.5
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 6.0e-183 644.4 421 75.5
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 2.3e-182 642.5 424 75.0
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 3.9e-182 641.7 425 74.1
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 6.6e-182 641.0 425 76.2
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.5e-181 639.0 425 75.8
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.3e-181 638.3 425 76.0
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 7.3e-181 637.5 425 75.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.8e-180 635.6 425 75.3
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.6e-180 635.2 425 74.6
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.7e-180 634.8 425 75.3
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.1e-179 633.6 425 73.9
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.8e-179 632.9 425 74.1
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 4.0e-179 631.7 422 73.5
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 6.9e-179 630.9 425 73.9
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.0e-179 630.6 422 74.2
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 1.5e-178 629.8 425 73.2
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 2.0e-178 629.4 425 74.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.0e-178 629.4 425 75.1
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 2.6e-178 629.0 425 73.6
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.4e-178 628.6 425 74.1
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.8e-178 627.9 425 74.4
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 2.9e-177 625.5 425 75.1
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 6.4e-177 624.4 427 74.2
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.1e-176 623.6 426 73.0
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 4.2e-176 621.7 425 73.9
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 4.2e-176 621.7 425 72.7
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 9.3e-176 620.5 426 74.4
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.7e-175 619.0 432 72.5
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 2.7e-175 619.0 422 73.2
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-174 615.5 425 73.9
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 5.1e-174 614.8 425 73.2
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 5.1e-174 614.8 425 76.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 6.6e-174 614.4 423 73.5
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.1e-173 613.6 425 73.2
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.5e-173 612.5 434 72.6
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 3.3e-173 612.1 425 72.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 5.6e-173 611.3 425 71.5
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.3e-173 610.9 422 73.0
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 7.3e-173 610.9 425 72.0
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 9.6e-173 610.5 426 71.8
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 4.8e-172 608.2 425 72.2
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 6.2e-172 607.8 422 72.7
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 8.1e-172 607.4 423 71.4
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 3.1e-171 605.5 428 72.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 3.1e-171 605.5 427 72.1
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.1e-171 605.5 425 71.5
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 4.0e-171 605.1 425 71.5
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.9e-171 604.4 422 72.3
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 2.6e-170 602.4 427 71.0
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.3e-169 600.1 427 70.7
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 3.8e-169 598.6 425 70.8
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 4.9e-169 598.2 423 71.2
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.4e-168 596.7 424 72.2
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 2.1e-167 592.8 426 69.0
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.7e-167 592.4 424 70.3
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.0e-166 590.5 460 67.2
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.3e-166 590.1 429 68.8
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 3.0e-166 589.0 459 67.3
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 5.1e-166 588.2 422 72.3
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 6.7e-166 587.8 423 69.7
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 1.6e-164 583.2 425 68.9
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.7e-164 582.0 464 65.9
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 8.1e-164 580.9 426 70.0
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.4e-163 580.1 423 68.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.8e-163 579.7 437 69.8
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 2.0e-162 576.2 425 69.4
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 2.0e-162 576.2 427 68.4
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.5e-162 575.1 427 67.4
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 2.2e-161 572.8 383 76.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 8.4e-161 570.9 424 69.1
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 1.1e-160 570.5 425 67.3
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 7.1e-160 567.8 423 70.2
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.3e-158 563.5 422 64.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 1.3e-158 563.5 422 65.6
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.5e-157 560.1 403 69.0
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.8e-156 555.1 425 66.6
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.4e-155 552.7 425 67.3
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.2e-154 550.4 425 66.4
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.5e-154 550.1 426 66.2
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.0e-154 549.7 425 65.4
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 6.5e-153 544.7 426 66.0
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 1.9e-152 543.1 426 65.7
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 3.2e-152 542.3 425 65.4
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-151 540.0 427 65.1
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.6e-151 540.0 427 65.1
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.1e-151 539.7 426 65.0
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 2.7e-151 539.3 426 65.3
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 3.5e-151 538.9 425 65.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 8.7e-150 534.3 426 65.0
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-149 533.9 423 64.8
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.5e-149 533.5 425 66.4
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 9.7e-149 530.8 425 64.2
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 9.7e-149 530.8 425 64.2
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.8e-148 529.3 425 63.5
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 4.8e-148 528.5 425 64.5
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.4e-147 526.2 425 63.8
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 4.1e-147 525.4 425 64.5
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.6e-146 522.7 425 64.2
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 5.9e-146 521.5 425 63.3
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.0e-145 520.8 426 63.6
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.2e-145 519.6 389 71.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 3.8e-145 518.8 437 63.8
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 5.0e-145 518.5 422 61.4
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.1e-144 517.3 324 77.8
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 6.1e-143 511.5 426 62.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 6.7e-142 508.1 426 62.2
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.1e-141 507.3 313 78.6
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 3.3e-141 505.8 425 61.6
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.1e-139 499.2 426 62.0
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 5.0e-137 491.9 381 65.6
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 4.7e-135 485.3 385 65.2
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 7.9e-135 484.6 365 66.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.2e-132 476.5 424 56.4
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.4e-131 473.8 444 57.2
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.8e-129 465.7 427 55.0
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.4e-128 463.8 427 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 9.4e-128 461.1 451 54.5
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 2.9e-113 412.9 430 50.7
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 2.9e-113 412.9 399 56.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 9.8e-109 397.9 241 81.7
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 2.7e-106 389.8 239 81.2
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 5.2e-102 375.6 336 59.8
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.8e-100 369.8 283 62.9
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 4.9e-100 369.0 433 50.8
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.7e-98 363.2 353 56.4
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 9.5e-96 354.8 356 55.1
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.7e-71 272.7 214 65.9
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 5.2e-70 269.2 431 38.3
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 3.5e-66 256.5 325 46.5
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 3.4e-61 240.0 333 39.9
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 7.6e-61 238.8 176 71.6
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.3e-55 221.5 375 40.0
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 1.4e-54 218.0 194 61.3
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.3e-49 201.4 140 67.1
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 8.7e-49 198.7 304 42.1
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.9e-48 197.6 194 56.2
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 9.0e-46 188.7 252 44.8
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 2.2e-36 157.5 332 31.6
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.9e-32 144.4 154 49.4
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.8e-31 140.6 105 68.6
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.2e-28 131.0 80 71.2
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.1e-24 118.6 76 73.7
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 3.1e-22 110.5 124 45.2
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-21 108.6 78 64.1
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-21 108.6 78 64.1
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 8.5e-20 102.4 329 24.3
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.0e-13 81.3 48 85.4
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.0e-12 79.0 99 48.5
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.1e-11 75.5 62 59.7
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 4.2e-11 73.6 115 44.3
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 2.1e-10 71.2 37 89.2
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.6e-08 64.3 52 63.5
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 1.3e-07 62.0 204 26.5
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 2.2e-07 61.2 204 27.0
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 3.7e-07 60.5 204 27.0
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 4.8e-07 60.1 47 61.7
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 4.8e-07 60.1 47 61.7
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 4.8e-07 60.1 204 27.0
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 4.8e-07 60.1 204 27.0
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 6.3e-07 59.7 204 27.0
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 6.3e-07 59.7 204 27.0
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 8.2e-07 59.3 204 27.0
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 1.8e-06 58.2 204 26.0
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 2.4e-06 57.8 204 26.0
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 3.1e-06 57.4 213 26.3
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 3.1e-06 57.4 213 26.3
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 3.1e-06 57.4 204 26.0
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 4.1e-06 57.0 213 26.3
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 4.1e-06 57.0 213 26.3
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 4.1e-06 57.0 213 26.3
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.3e-06 56.6 75 42.7
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 9.1e-06 55.8 213 25.8


User provided reference genes

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