Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.2e-32 141.7 73 100.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 5.2e-26 120.6 76 86.8
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.7e-21 105.5 66 80.3
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.1e-15 86.3 50 80.0
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-15 86.3 50 78.0
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.4e-15 85.1 50 80.0
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 9.2e-15 83.2 65 64.6
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.6e-14 82.4 68 60.3
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 2.0e-14 82.0 64 65.6
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 2.0e-14 82.0 48 77.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 2.7e-14 81.6 53 71.7
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 4.6e-14 80.9 73 58.9
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 1.0e-13 79.7 67 59.7
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.3e-13 79.3 67 62.7
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 1.7e-13 79.0 68 60.3
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 1.7e-13 79.0 59 62.7
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.7e-13 79.0 55 69.1
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 3.9e-13 77.8 64 62.5
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 3.9e-13 77.8 64 62.5
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 3.9e-13 77.8 64 62.5
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 5.0e-13 77.4 70 61.4
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 6.6e-13 77.0 55 67.3
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 6.6e-13 77.0 69 59.4
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 8.6e-13 76.6 43 81.4
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 1.1e-12 76.3 59 67.8
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.1e-12 76.3 52 71.2
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.1e-12 76.3 45 80.0
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 1.1e-12 76.3 59 71.2
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.1e-12 76.3 53 73.6
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.5e-12 75.9 47 76.6
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.3e-12 74.7 59 61.0
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 4.3e-12 74.3 66 59.1
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.6e-12 73.9 64 57.8
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 5.6e-12 73.9 57 63.2
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 5.6e-12 73.9 51 68.6
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 7.3e-12 73.6 60 65.0
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 7.3e-12 73.6 62 62.9
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 7.3e-12 73.6 53 64.2
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 9.5e-12 73.2 49 71.4
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.6e-11 72.4 52 71.2
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.1e-11 72.0 67 59.7
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 2.1e-11 72.0 47 74.5
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 2.1e-11 72.0 55 67.3
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 2.8e-11 71.6 58 62.1
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.8e-11 71.6 55 63.6
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 3.6e-11 71.2 65 60.0
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 4.7e-11 70.9 45 73.3
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 4.7e-11 70.9 45 73.3
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 4.7e-11 70.9 45 73.3
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.7e-11 70.9 60 61.7
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 4.7e-11 70.9 64 57.8
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 4.7e-11 70.9 76 56.6
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 6.1e-11 70.5 43 76.7
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 6.1e-11 70.5 46 71.7
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 8.0e-11 70.1 44 75.0
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 8.0e-11 70.1 47 72.3
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 8.0e-11 70.1 64 60.9
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 1.0e-10 69.7 50 68.0
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.4e-10 69.3 53 69.8
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 1.8e-10 68.9 45 71.1
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 1.8e-10 68.9 45 71.1
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.8e-10 68.9 46 69.6
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 2.3e-10 68.6 62 61.3
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 2.3e-10 68.6 45 71.1
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 3.1e-10 68.2 67 58.2
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 4.0e-10 67.8 47 70.2
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 5.2e-10 67.4 48 64.6
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 6.8e-10 67.0 68 57.4
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 8.9e-10 66.6 70 51.4
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 1.2e-09 66.2 53 56.6
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 1.2e-09 66.2 60 55.0
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.5e-09 65.9 61 57.4
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.5e-09 65.9 50 62.0
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 1.5e-09 65.9 40 72.5
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 2.0e-09 65.5 72 52.8
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 2.6e-09 65.1 53 56.6
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 2.6e-09 65.1 46 67.4
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 3.4e-09 64.7 49 65.3
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 5.8e-09 63.9 46 65.2
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.7e-08 62.4 63 55.6
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 1.7e-08 62.4 64 54.7
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.7e-08 62.4 71 49.3
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 2.2e-08 62.0 48 58.3
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.2e-08 62.0 58 56.9
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 3.7e-08 61.2 38 71.1
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 8.3e-08 60.1 43 67.4
unitig_0.g1010 Utricularia gibba HOM05D007833 ORTHO05D009855 2.4e-07 58.5 69 46.4
AUR62036455 Chenopodium quinoa HOM05D045935 ORTHO05D009855 5.4e-07 57.4 39 66.7
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 9.2e-07 56.6 42 54.8
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 2.0e-06 55.5 68 52.9
TAR626G0451 Trochodendron aralioides HOM05D007598 ORTHO05D009632 2.0e-06 55.5 53 52.8
Zm00001eb188980 Zea mays HOM05D027844 ORTHO05D037205 4.6e-06 54.3 68 50.0
Zm00001eb442030 Zea mays HOM05D027844 ORTHO05D037205 4.6e-06 54.3 68 50.0
Dinv32243 Davidia involucrata HOM05D007598 ORTHO05D009632 6.0e-06 53.9 49 55.1


User provided reference genes

Program Settings