Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.2e-100 369.0 195 100.0
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.2e-100 369.0 195 100.0
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.2e-100 369.0 195 100.0
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.3e-97 359.0 195 96.9
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 4.7e-82 308.1 195 85.6
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 4.7e-82 308.1 195 85.6
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 1.2e-77 293.5 200 82.0
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 2.3e-68 262.7 196 73.0
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 4.4e-64 248.4 199 70.9
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 5.4e-62 241.5 206 70.4
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.7e-60 236.5 195 70.3
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 3.0e-60 235.7 207 70.0
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 3.0e-60 235.7 195 70.3
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 3.0e-60 235.7 205 67.8
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 3.9e-60 235.3 195 70.8
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 6.6e-60 234.6 196 69.9
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 1.5e-59 233.4 195 68.2
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 2.5e-59 232.6 195 69.2
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 3.3e-59 232.3 211 65.9
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 5.6e-59 231.5 210 65.2
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 7.3e-59 231.1 199 68.3
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 9.5e-59 230.7 195 69.2
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 1.2e-58 230.3 209 66.0
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 1.2e-58 230.3 206 68.0
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 1.6e-58 229.9 204 68.6
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 1.6e-58 229.9 195 69.7
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 2.1e-58 229.6 214 65.9
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 2.1e-58 229.6 195 67.2
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 2.1e-58 229.6 186 68.8
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.1e-58 229.6 195 69.7
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 2.8e-58 229.2 200 67.0
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 2.8e-58 229.2 197 70.6
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 3.6e-58 228.8 199 68.3
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 3.6e-58 228.8 206 65.5
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 3.6e-58 228.8 194 67.5
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 4.7e-58 228.4 206 65.5
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 4.7e-58 228.4 207 68.1
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 6.2e-58 228.0 156 77.6
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 8.0e-58 227.6 215 63.7
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 8.0e-58 227.6 205 66.3
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 1.1e-57 227.3 204 66.2
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.4e-57 226.9 202 67.3
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 1.4e-57 226.9 196 67.9
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 1.4e-57 226.9 214 65.0
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 1.4e-57 226.9 211 64.9
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 1.4e-57 226.9 195 67.7
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 1.8e-57 226.5 198 66.2
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 2.3e-57 226.1 200 68.0
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 2.3e-57 226.1 200 68.0
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 3.1e-57 225.7 204 66.2
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 3.1e-57 225.7 195 67.7
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 4.0e-57 225.3 214 64.5
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 5.2e-57 224.9 198 66.7
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 5.2e-57 224.9 195 67.7
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 5.2e-57 224.9 207 66.2
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 5.2e-57 224.9 212 65.1
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 6.8e-57 224.6 197 68.0
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 6.8e-57 224.6 211 63.5
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 6.8e-57 224.6 196 68.4
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 8.9e-57 224.2 202 65.3
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 8.9e-57 224.2 202 65.3
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 8.9e-57 224.2 202 65.3
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 8.9e-57 224.2 211 64.5
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 8.9e-57 224.2 196 68.4
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 8.9e-57 224.2 196 68.4
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 8.9e-57 224.2 195 66.2
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 1.2e-56 223.8 211 64.0
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 2.0e-56 223.0 199 66.3
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 2.0e-56 223.0 210 65.2
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 2.6e-56 222.6 213 64.8
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 2.6e-56 222.6 200 68.0
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.6e-56 222.6 200 66.5
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 3.4e-56 222.2 202 64.9
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 3.4e-56 222.2 204 66.2
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 4.4e-56 221.9 214 64.5
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 4.4e-56 221.9 156 74.4
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.4e-56 221.9 204 66.2
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 4.4e-56 221.9 218 62.4
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 5.8e-56 221.5 145 80.7
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 7.5e-56 221.1 199 65.3
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 7.5e-56 221.1 210 64.3
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 7.5e-56 221.1 210 63.8
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 9.8e-56 220.7 199 66.8
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 9.8e-56 220.7 200 65.5
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 9.8e-56 220.7 195 65.6
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 9.8e-56 220.7 197 66.5
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 9.8e-56 220.7 194 64.4
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 1.3e-55 220.3 200 65.0
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 1.3e-55 220.3 200 65.0
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 1.3e-55 220.3 204 65.7
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.3e-55 220.3 204 65.7
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.3e-55 220.3 198 65.7
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 1.3e-55 220.3 210 65.2
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 1.7e-55 219.9 195 66.2
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 2.2e-55 219.5 202 66.3
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 2.2e-55 219.5 194 67.5
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 2.9e-55 219.2 200 65.0
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.9e-55 219.2 213 62.0
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 2.9e-55 219.2 213 61.5
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 3.7e-55 218.8 200 65.5
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 3.7e-55 218.8 210 63.8
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 4.9e-55 218.4 214 64.5
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 4.9e-55 218.4 205 62.9
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 6.4e-55 218.0 197 66.5
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 6.4e-55 218.0 196 66.8
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 6.4e-55 218.0 204 65.2
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 8.3e-55 217.6 195 66.2
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 8.3e-55 217.6 195 66.7
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.1e-54 217.2 209 64.6
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 1.1e-54 217.2 195 65.1
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 1.9e-54 216.5 218 61.9
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 4.1e-54 215.3 118 90.7
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 7.0e-54 214.5 204 64.7
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 1.6e-53 213.4 104 100.0
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 6.0e-53 211.5 104 99.0
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 7.8e-53 211.1 111 91.9
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 1.0e-52 210.7 203 63.5
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 1.0e-52 210.7 104 97.1
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 1.3e-52 210.3 104 98.1
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 1.3e-52 210.3 203 62.6
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 5.0e-52 208.4 205 62.9
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 6.6e-52 208.0 131 78.6
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 6.6e-52 208.0 204 61.3
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 8.6e-52 207.6 204 62.7
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 3.3e-51 205.7 190 63.7
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 5.6e-51 204.9 164 70.7
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 5.6e-51 204.9 195 63.6
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 7.3e-51 204.5 200 63.0
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 9.5e-51 204.1 172 66.9
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 2.1e-50 203.0 104 94.2
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 2.1e-50 203.0 205 58.0
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 2.8e-50 202.6 185 61.1
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 3.6e-50 202.2 110 90.9
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 2.0e-48 196.4 175 64.6
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 3.7e-47 192.2 103 93.2
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 6.4e-47 191.4 100 91.0
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 5.6e-43 178.3 203 53.7
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 4.7e-42 175.3 104 78.8
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.1e-41 172.6 111 73.0
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 1.2e-40 170.6 152 60.5
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 1.5e-40 170.2 138 64.5
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 5.4e-38 161.8 197 50.3
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 2.7e-37 159.5 101 75.2
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 4.3e-35 152.1 185 50.3
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 7.3e-35 151.4 150 58.0
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 3.4e-32 142.5 107 62.6
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 5.4e-30 135.2 99 64.6
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.7e-23 113.6 100 52.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 6.0e-21 105.1 100 50.0
FAN12G4109 Fragaria x ananassa HOM05D001946 ORTHO05D002111 1.4e-06 57.4 113 31.9
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 7.1e-06 55.1 108 31.5


User provided reference genes

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