Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.1e-41 172.6 132 100.0
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.5e-39 165.6 132 96.2
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.1e-37 158.3 132 71.2
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 9.0e-37 157.1 132 88.6
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 1.2e-36 156.8 132 72.0
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 1.2e-36 156.8 132 72.0
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 1.5e-36 156.4 132 72.0
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 2.0e-36 156.0 132 71.2
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-36 155.6 131 84.7
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-36 155.6 131 84.7
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 3.4e-36 155.2 132 82.6
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 3.4e-36 155.2 132 71.2
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 3.4e-36 155.2 132 70.5
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 4.5e-36 154.8 132 83.3
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 7.6e-36 154.1 132 80.3
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.0e-35 153.7 132 69.7
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 1.0e-35 153.7 131 71.0
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 1.0e-35 153.7 132 69.7
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.0e-35 153.7 132 79.5
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 1.3e-35 153.3 132 70.5
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.3e-35 153.3 132 70.5
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.7e-35 152.9 132 70.5
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.7e-35 152.9 132 69.7
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 2.2e-35 152.5 132 84.1
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 2.2e-35 152.5 133 69.9
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 2.9e-35 152.1 132 75.8
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.9e-35 152.1 131 70.2
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 2.9e-35 152.1 133 69.2
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 2.9e-35 152.1 132 78.8
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 2.9e-35 152.1 130 70.0
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.9e-35 152.1 132 69.7
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.8e-35 151.8 132 69.7
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 3.8e-35 151.8 132 69.7
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 6.5e-35 151.0 132 68.2
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 6.5e-35 151.0 132 68.9
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 6.5e-35 151.0 132 68.9
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-34 150.2 129 67.4
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.1e-34 150.2 132 75.8
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 1.4e-34 149.8 130 69.2
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.9e-34 149.4 132 69.7
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 2.5e-34 149.1 132 68.2
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 2.5e-34 149.1 132 67.4
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 2.5e-34 149.1 132 68.9
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 2.5e-34 149.1 132 68.9
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.5e-34 149.1 131 67.9
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 3.2e-34 148.7 129 67.4
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 3.2e-34 148.7 132 77.3
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 3.2e-34 148.7 131 77.9
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 3.2e-34 148.7 132 68.2
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 4.2e-34 148.3 129 67.4
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 4.2e-34 148.3 129 67.4
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 5.5e-34 147.9 129 66.7
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 5.5e-34 147.9 132 67.4
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 5.5e-34 147.9 132 67.4
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 5.5e-34 147.9 133 66.9
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 7.2e-34 147.5 131 70.2
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 7.2e-34 147.5 132 68.2
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.2e-33 146.7 128 67.2
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.2e-33 146.7 129 66.7
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.2e-33 146.7 132 70.5
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-33 146.4 129 65.9
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 1.6e-33 146.4 132 66.7
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 2.1e-33 146.0 132 65.9
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.7e-33 145.6 129 65.9
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 2.7e-33 145.6 132 66.7
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 4.6e-33 144.8 132 65.9
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 6.1e-33 144.4 129 81.4
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 6.1e-33 144.4 132 88.6
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.0e-32 143.7 132 65.9
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.3e-32 143.3 130 66.9
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 2.3e-32 142.5 132 65.2
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 2.3e-32 142.5 132 65.2
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.0e-32 142.1 161 57.1
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 3.0e-32 142.1 132 85.6
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 3.9e-32 141.7 129 65.9
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 3.9e-32 141.7 129 77.5
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 5.1e-32 141.4 129 65.9
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 5.1e-32 141.4 130 65.4
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 5.1e-32 141.4 129 72.9
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 5.1e-32 141.4 129 65.9
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 5.1e-32 141.4 129 78.3
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 8.7e-32 140.6 129 65.9
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 1.1e-31 140.2 130 76.2
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.5e-31 139.8 130 64.6
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.9e-31 139.4 129 65.9
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 2.5e-31 139.0 130 63.8
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 3.3e-31 138.7 131 78.6
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 9.7e-31 137.1 153 58.8
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 9.7e-31 137.1 132 68.2
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.7e-30 136.3 122 64.8
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 2.2e-30 136.0 80 93.8
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 2.8e-30 135.6 121 64.5
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 2.8e-30 135.6 80 92.5
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 3.7e-30 135.2 80 92.5
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.8e-30 134.8 120 68.3
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 6.3e-30 134.4 80 92.5
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 8.2e-30 134.0 122 63.1
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.1e-29 133.7 80 92.5
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 1.4e-29 133.3 119 81.5
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.4e-29 133.3 119 67.2
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 4.1e-29 131.7 121 65.3
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 4.1e-29 131.7 80 90.0
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 6.9e-29 131.0 80 90.0
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.5e-28 129.8 120 65.0
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 2.0e-28 129.4 80 88.8
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.0e-28 129.4 80 87.5
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 4.5e-28 128.3 80 86.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 7.7e-28 127.5 80 86.2
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 7.7e-28 127.5 128 80.5
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 1.7e-27 126.3 80 86.2
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.7e-27 126.3 134 79.9
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 5.0e-27 124.8 117 75.2
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 6.5e-27 124.4 136 81.6
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.4e-26 123.2 78 87.2
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 2.5e-26 122.5 80 85.0
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 3.2e-26 122.1 117 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 1.6e-25 119.8 78 80.8
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 3.9e-24 115.2 66 95.5
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 5.1e-24 114.8 116 62.9
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.3e-23 112.1 131 62.6
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 9.7e-23 110.5 68 88.2
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.7e-22 109.8 70 87.1
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 2.2e-22 109.4 78 79.5
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 8.2e-22 107.5 131 55.7
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 1.2e-20 103.6 103 61.2
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 5.9e-20 101.3 68 82.4
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 3.8e-19 98.6 95 61.1
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 1.2e-17 93.6 78 61.5
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.1e-17 91.3 56 89.3
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.8e-16 89.7 58 84.5
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 2.0e-15 86.3 81 61.7
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 9.7e-15 84.0 54 85.2
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.2e-14 82.8 86 57.0
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 6.3e-14 81.3 80 53.8
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 1.8e-13 79.7 71 67.6
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 9.1e-13 77.4 75 65.3
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 5.9e-12 74.7 53 75.5
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 3.8e-11 72.0 132 43.2
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.2e-07 60.5 40 82.5


User provided reference genes

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