Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035251 Chenopodium quinoa HOM05D006955 ORTHO05D008701 3.8e-99 365.2 227 100.0
AUR62002894 Chenopodium quinoa HOM05D006955 ORTHO05D008701 3.5e-97 358.6 227 83.3
EL10Ac6g14443 Beta vulgaris HOM05D006955 ORTHO05D008701 1.4e-90 336.7 224 81.7
Hund25084 Selenicereus undatus HOM05D006955 ORTHO05D008701 9.3e-90 334.0 227 79.3
Ah.02g127040 Amaranthus hybridus HOM05D006955 ORTHO05D008701 3.6e-86 322.0 227 76.7
Sc11g0003240 Simmondsia chinensis HOM05D006955 ORTHO05D008701 7.6e-84 314.3 227 71.4
Sc11g0003300 Simmondsia chinensis HOM05D006955 ORTHO05D008701 7.6e-84 314.3 227 71.4
Actinidia16638 Actinidia chinensis HOM05D006955 ORTHO05D008701 7.1e-82 307.8 227 69.6
Actinidia14871 Actinidia chinensis HOM05D006955 ORTHO05D008701 3.5e-81 305.4 227 68.7
Dinv21110 Davidia involucrata HOM05D006955 ORTHO05D008701 1.8e-80 303.1 227 69.2
CSS0004457 Camellia sinensis var. sinensis HOM05D006955 ORTHO05D008701 1.9e-79 299.7 227 67.8
Nn3g17799 Nelumbo nucifera HOM05D006955 ORTHO05D008701 5.6e-79 298.1 227 66.5
PSO478G1614 Papaver somniferum HOM05D006955 ORTHO05D008701 2.1e-78 296.2 227 68.3
PSO017G5158 Papaver somniferum HOM05D006955 ORTHO05D008701 3.7e-78 295.4 227 68.3
Sp1g11840 Schrenkiella parvula HOM05D006955 ORTHO05D008701 3.7e-78 295.4 227 66.1
THA.LOC104805251 Tarenaya hassleriana HOM05D006955 ORTHO05D008701 3.7e-78 295.4 227 71.4
RcHm_v2.0_Chr4g0435501 Rosa chinensis HOM05D006955 ORTHO05D008701 4.8e-78 295.0 225 66.7
Haze_17460 Corylus avellana HOM05D006955 ORTHO05D008701 8.1e-78 294.3 227 68.3
Aqoxy3G00330 Aquilegia oxysepala HOM05D006955 ORTHO05D008701 1.4e-77 293.5 227 65.6
TPR.G38250 Trifolium pratense HOM05D006955 ORTHO05D008701 2.4e-77 292.7 227 67.0
Sed0012161 Sechium edule HOM05D006955 ORTHO05D008701 3.1e-77 292.4 227 67.8
CsaV3_5G034170 Cucumis sativus L. HOM05D006955 ORTHO05D008701 5.3e-77 291.6 227 67.4
Ca_28012_v3 Cicer arietinum L. HOM05D006955 ORTHO05D008701 9.0e-77 290.8 227 66.1
C05p09970 Brassica napus HOM05D006955 ORTHO05D008701 1.5e-76 290.0 227 71.4
Lalb_Chr17g0342031 Lupinus albus HOM05D006955 ORTHO05D008701 1.5e-76 290.0 227 66.1
AL1G25090 Arabidopsis lyrata HOM05D006955 ORTHO05D008701 2.0e-76 289.7 227 73.1
MELO3C012231.2 Cucumis melo HOM05D006955 ORTHO05D008701 2.0e-76 289.7 224 67.4
Lj3C1017T15 Lonicera japonica HOM05D006955 ORTHO05D008701 2.0e-76 289.7 227 64.8
Carub.0001s1306 Capsella rubella HOM05D006955 ORTHO05D008701 3.4e-76 288.9 227 79.7
Glyma.08G260400 Glycine max HOM05D006955 ORTHO05D008701 4.5e-76 288.5 227 66.1
MSTRG.13515 Avicennia marina HOM05D006955 ORTHO05D008701 7.6e-76 287.7 224 65.2
Thhalv10008697m.g Eutrema salsugineum HOM05D006955 ORTHO05D008701 1.0e-75 287.3 227 69.6
arahy.Tifrunner.gnm1.ann1.FS5FM4 Arachis hypogaea HOM05D006955 ORTHO05D008701 2.2e-75 286.2 225 67.1
A06p08430 Brassica napus HOM05D006955 ORTHO05D008701 2.2e-75 286.2 227 70.9
BraA06t24039Z Brassica rapa HOM05D006955 ORTHO05D008701 2.2e-75 286.2 227 70.9
Psat2g093000 Pisum sativum HOM05D006955 ORTHO05D008701 2.9e-75 285.8 227 66.5
TWI79G1443 Tripterygium wilfordii HOM05D006955 ORTHO05D008701 2.9e-75 285.8 227 63.9
arahy.Tifrunner.gnm1.ann1.0188KY Arachis hypogaea HOM05D006955 ORTHO05D008701 3.8e-75 285.4 225 67.1
arahy.Tifrunner.gnm1.ann1.5TE0FE Arachis hypogaea HOM05D006955 ORTHO05D008701 3.8e-75 285.4 225 67.1
AT1G13330 Arabidopsis thaliana HOM05D006955 ORTHO05D008701 4.9e-75 285.0 227 72.7
Phvul.002G082400 Phaseolus vulgaris HOM05D006955 ORTHO05D008701 4.9e-75 285.0 227 64.8
GSVIVG01011919001 Vitis vinifera HOM05D006955 ORTHO05D008701 4.9e-75 285.0 227 64.8
Migut.L01079 Erythranthe guttata HOM05D006955 ORTHO05D008701 6.5e-75 284.6 224 65.2
HanXRQChr08g0214231 Helianthus annuus HOM05D006955 ORTHO05D008701 6.5e-75 284.6 227 77.1
Potri.008G118800 Populus trichocarpa HOM05D006955 ORTHO05D008701 6.5e-75 284.6 227 64.3
Manes.14G100100 Manihot esculenta HOM05D006955 ORTHO05D008701 8.4e-75 284.3 217 68.7
Rhsim12G0082400 Rhododendron simsii HOM05D006955 ORTHO05D008701 8.4e-75 284.3 237 62.0
TAR629G1122 Trochodendron aralioides HOM05D006955 ORTHO05D008701 8.4e-75 284.3 250 60.0
BcaC05g25057 Brassica carinata HOM05D006955 ORTHO05D008701 1.1e-74 283.9 227 70.5
BcaC05g25064 Brassica carinata HOM05D006955 ORTHO05D008701 1.1e-74 283.9 227 70.5
BolC5t29739H Brassica oleracea HOM05D006955 ORTHO05D008701 1.1e-74 283.9 227 70.5
CANSAT56G1672 Cannabis sativa HOM05D006955 ORTHO05D008701 1.4e-74 283.5 226 65.5
Medtr5g055150 Medicago truncatula HOM05D006955 ORTHO05D008701 1.4e-74 283.5 227 65.2
Sabra08G0090200 Salix brachista HOM05D006955 ORTHO05D008701 1.9e-74 283.1 227 63.9
Eucgr.G02335 Eucalyptus grandis HOM05D006955 ORTHO05D008701 2.5e-74 282.7 227 63.9
SalBow8G1483 Salvia bowleyana HOM05D006955 ORTHO05D008701 2.5e-74 282.7 227 64.8
CARHR013710 Cardamine hirsuta HOM05D006955 ORTHO05D008701 4.2e-74 282.0 227 68.7
Cc11_g10340 Coffea canephora HOM05D006955 ORTHO05D008701 4.2e-74 282.0 225 64.0
Prupe.1G308500 Prunus persica HOM05D006955 ORTHO05D008701 9.3e-74 280.8 225 61.8
COL.COLO4_07900 Corchorus olitorius HOM05D006955 ORTHO05D008701 1.2e-73 280.4 227 68.7
Peaxi162Scf00382g00128 Petunia axillaris HOM05D006955 ORTHO05D008701 1.2e-73 280.4 227 63.9
TAR622G0049 Trochodendron aralioides HOM05D006955 ORTHO05D008701 2.1e-73 279.6 227 70.0
Aa31LG1G1480 Aethionema arabicum HOM05D006955 ORTHO05D008701 2.7e-73 279.3 225 71.6
ECA233G4186 Erigeron canadensis HOM05D006955 ORTHO05D008701 3.5e-73 278.9 224 63.4
Gohir.A13G053700 Gossypium hirsutum HOM05D006955 ORTHO05D008701 3.5e-73 278.9 227 63.4
Gohir.D13G071200 Gossypium hirsutum HOM05D006955 ORTHO05D008701 3.5e-73 278.9 227 63.4
Gorai.013G081500 Gossypium raimondii HOM05D006955 ORTHO05D008701 3.5e-73 278.9 227 63.4
PGR119G2132 Punica granatum HOM05D006955 ORTHO05D008701 6.0e-73 278.1 227 67.8
Lj2g0004168 Lotus japonicus HOM05D006955 ORTHO05D008701 7.9e-73 277.7 227 63.9
Cpa.g.sc1.190 Carica papaya HOM05D006955 ORTHO05D008701 1.0e-72 277.3 224 70.5
SGA_v2.0_scaffold124G33553 Striga asiatica HOM05D006955 ORTHO05D008701 3.9e-72 275.4 224 62.9
FAN07G1824 Fragaria x ananassa HOM05D006955 ORTHO05D008701 8.7e-72 274.2 221 63.3
vmacro01371 Vaccinium macrocarpon HOM05D006955 ORTHO05D008701 1.1e-71 273.9 267 55.8
Atru.chr11.1296 Acer truncatum HOM05D006955 ORTHO05D008701 1.9e-71 273.1 227 61.7
Glyma.01G083100 Glycine max HOM05D006955 ORTHO05D008701 3.3e-71 272.3 228 63.6
Ciclev10032679m.g Citrus clementina HOM05D006955 ORTHO05D008701 5.7e-71 271.6 227 70.0
FAN12G2251 Fragaria x ananassa HOM05D006955 ORTHO05D008701 5.7e-71 271.6 221 68.8
Oeu033300.1 Olea europaea HOM05D006955 ORTHO05D008701 5.7e-71 271.6 260 56.9
ATR0665G168 Amborella trichopoda HOM05D006955 ORTHO05D008701 7.4e-71 271.2 225 61.8
QL01p043991 Quercus lobata HOM05D006955 ORTHO05D008701 1.3e-70 270.4 225 69.3
FAN22G1329 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.6e-70 270.0 242 59.5
Nitab4.5_0004895g0100 Nicotiana tabacum HOM05D006955 ORTHO05D008701 2.8e-70 269.2 225 61.8
VMungo1215G2393 Vigna mungo HOM05D006955 ORTHO05D008701 6.2e-70 268.1 225 62.7
FAN12G1265 Fragaria x ananassa HOM05D006955 ORTHO05D008701 1.1e-69 267.3 235 65.5
Lsat_1_v5_gn_8_38900 Lactuca sativa HOM05D006955 ORTHO05D008701 1.1e-69 267.3 204 67.2
DCAR_023669 Daucus carota HOM05D006955 ORTHO05D008701 2.4e-69 266.2 210 65.7
BolC5t29750H Brassica oleracea HOM05D006955 ORTHO05D008701 6.9e-69 264.6 210 65.2
ClCG05G022860 Citrullus lanatus HOM05D006955 ORTHO05D008701 2.9e-67 259.2 241 59.8
Duzib251G0691 Durio zibethinus HOM05D006955 ORTHO05D008701 4.6e-65 251.9 227 64.8
MD16G1044800 Malus domestica HOM05D006955 ORTHO05D008701 1.8e-64 250.0 224 62.5
CAN.G656.28 Capsicum annuum HOM05D006955 ORTHO05D008701 8.7e-64 247.7 222 73.4
MD13G1044000 Malus domestica HOM05D006955 ORTHO05D008701 8.7e-64 247.7 224 63.4
Solyc05g009560.4 Solanum lycopersicum HOM05D006955 ORTHO05D008701 4.3e-63 245.4 222 72.1
Sopen05g005370 Solanum pennellii HOM05D006955 ORTHO05D008701 4.3e-63 245.4 222 72.1
CDE05G2755 Ceratophyllum demersum HOM05D006955 ORTHO05D008701 5.7e-63 245.0 223 64.1
Thecc.02G357700 Theobroma cacao HOM05D006955 ORTHO05D008701 1.8e-61 240.0 194 62.9
HPP92_011092 Vanilla planifolia HOM05D006955 ORTHO05D008701 6.9e-61 238.0 214 57.0
Nitab4.5_0003823g0050 Nicotiana tabacum HOM05D006955 ORTHO05D008701 3.4e-60 235.7 203 59.1
CiPaw.15G005500 Carya illinoinensis HOM05D006955 ORTHO05D008701 7.7e-60 234.6 195 66.7
HPP92_011108 Vanilla planifolia HOM05D006955 ORTHO05D008701 6.5e-59 231.5 207 56.5
SHI33974 Sapria himalayana HOM05D006955 ORTHO05D008701 1.0e-56 224.2 198 57.1
Zm00001eb216450 Zea mays HOM05D006955 ORTHO05D008701 1.8e-56 223.4 222 57.2
Mapoly0015s0151 Marchantia polymorpha HOM05D006955 ORTHO05D008701 1.5e-55 220.3 221 50.2
SMO203G0092 Selaginella moellendorffii HOM05D006955 ORTHO05D008701 2.5e-50 203.0 209 50.7
SEGI_38068 Sequoiadendron giganteum HOM05D006955 ORTHO05D008701 5.5e-50 201.8 191 53.9
CBR_g3130 Chara braunii HOM05D006955 ORTHO05D008701 4.4e-47 192.2 213 51.2
Pp3c23_21510 Physcomitrium patens HOM05D006955 ORTHO05D008701 8.5e-35 151.4 196 39.8
CAN.G706.23 Capsicum annuum HOM05D006955 ORTHO05D008701 1.8e-32 143.7 184 46.2
CAN.G884.17 Capsicum annuum HOM05D000526 ORTHO05D000956 5.2e-32 142.1 210 44.3
PGSC0003DMG402012965 Solanum tuberosum HOM05D006955 ORTHO05D008701 2.0e-28 130.2 139 47.5
unitig_27.g25247 Utricularia gibba HOM05D006955 ORTHO05D008701 8.5e-27 124.8 84 66.7
unitig_27.g25246 Utricularia gibba HOM05D002984 ORTHO05D003561 4.2e-26 122.5 75 82.7
Potri.010G127101 Populus trichocarpa HOM05D006955 ORTHO05D008701 2.2e-22 110.2 94 61.7
Cre06.g284400 Chlamydomonas reinhardtii HOM05D006955 ORTHO05D008701 3.1e-21 106.3 220 41.8
MCO07G460 Micromonas commoda HOM05D006955 ORTHO05D008701 5.7e-15 85.5 214 27.1
Medtr4g007850 Medicago truncatula HOM05D003710 ORTHO05D258575 8.0e-09 65.1 92 46.7
Medtr5g055130 Medicago truncatula HOM05D002518 ORTHO05D002630 1.5e-07 60.8 94 46.8
PRCOL_00000208 Prasinoderma coloniale HOM05D006955 ORTHO05D008701 2.0e-07 60.5 208 24.0


User provided reference genes

Program Settings