Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62035029 Chenopodium quinoa HOM05D003904 ORTHO05D004378 4.1e-60 234.6 122 100.0
EL10Ac7g17872 Beta vulgaris HOM05D003904 ORTHO05D004378 1.1e-41 173.3 113 79.6
AUR62001117 Chenopodium quinoa HOM05D003904 ORTHO05D004378 1.1e-41 173.3 113 82.3
AUR62016559 Chenopodium quinoa HOM05D003904 ORTHO05D004378 1.6e-40 169.5 113 80.5
Hund05569 Selenicereus undatus HOM05D003904 ORTHO05D004378 8.1e-40 167.2 113 76.1
Ah.08g214500 Amaranthus hybridus HOM05D003904 ORTHO05D004378 6.4e-37 157.5 116 74.1
Hund18422 Selenicereus undatus HOM05D003904 ORTHO05D004378 4.3e-33 144.8 110 71.8
Sc17g0002200 Simmondsia chinensis HOM05D003904 ORTHO05D004378 6.4e-29 131.0 116 63.8
Dinv19185 Davidia involucrata HOM05D003904 ORTHO05D004378 4.2e-28 128.3 118 61.9
GSVIVG01038356001 Vitis vinifera HOM05D003904 ORTHO05D004378 5.4e-28 127.9 117 62.4
Sc05g0002020 Simmondsia chinensis HOM05D003904 ORTHO05D004378 1.6e-27 126.3 114 63.2
Nn1g07928 Nelumbo nucifera HOM05D003904 ORTHO05D004378 1.0e-26 123.6 121 62.0
Potri.002G244700 Populus trichocarpa HOM05D003904 ORTHO05D004378 1.3e-26 123.2 112 63.4
Nn3g20007 Nelumbo nucifera HOM05D003904 ORTHO05D004378 5.6e-25 117.9 117 59.8
Lj2C1127G11 Lonicera japonica HOM05D003904 ORTHO05D004378 2.1e-24 115.9 115 57.4
CANSAT01G1788 Cannabis sativa HOM05D003904 ORTHO05D004378 8.1e-24 114.0 109 59.6
TAR362G1128 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.4e-23 112.5 119 58.8
CANSAT01G1918 Cannabis sativa HOM05D003904 ORTHO05D004378 3.1e-23 112.1 109 58.7
Dinv12666 Davidia involucrata HOM05D003904 ORTHO05D004378 3.1e-23 112.1 122 54.1
Thecc.01G222100 Theobroma cacao HOM05D003904 ORTHO05D004378 3.1e-23 112.1 116 57.8
MSTRG.20964 Avicennia marina HOM05D003904 ORTHO05D004378 1.5e-22 109.8 118 54.2
SalBow6G0123 Salvia bowleyana HOM05D003904 ORTHO05D004378 1.5e-22 109.8 120 53.3
Duzib133G0063 Durio zibethinus HOM05D003904 ORTHO05D004378 2.0e-22 109.4 111 59.5
Manes.13G047800 Manihot esculenta HOM05D003904 ORTHO05D004378 2.6e-22 109.0 115 54.8
Manes.12G046500 Manihot esculenta HOM05D003904 ORTHO05D004378 3.4e-22 108.6 116 56.0
Ciclev10022271m.g Citrus clementina HOM05D003904 ORTHO05D004378 4.4e-22 108.2 115 58.3
Duzib138G1906 Durio zibethinus HOM05D003904 ORTHO05D004378 4.4e-22 108.2 116 56.9
Duzib211G0008 Durio zibethinus HOM05D003904 ORTHO05D004378 4.4e-22 108.2 116 56.9
Atru.chr6.1416 Acer truncatum HOM05D003904 ORTHO05D004378 5.8e-22 107.8 115 58.3
Gohir.A07G200400 Gossypium hirsutum HOM05D003904 ORTHO05D004378 7.6e-22 107.5 116 55.2
MD05G1172900 Malus domestica HOM05D003904 ORTHO05D004378 1.3e-21 106.7 113 57.5
MSTRG.18841 Avicennia marina HOM05D003904 ORTHO05D004378 1.7e-21 106.3 118 52.5
Os04g0378200 Oryza sativa ssp. japonica HOM05D003904 ORTHO05D004378 2.2e-21 105.9 110 59.1
Peaxi162Scf00238g00213 Petunia axillaris HOM05D003904 ORTHO05D004378 2.2e-21 105.9 122 54.9
Potri.014G190800 Populus trichocarpa HOM05D003904 ORTHO05D004378 2.9e-21 105.5 111 56.8
Prupe.8G200300 Prunus persica HOM05D003904 ORTHO05D004378 3.8e-21 105.1 116 59.5
TAR636G3655 Trochodendron aralioides HOM05D003904 ORTHO05D004378 3.8e-21 105.1 115 57.4
CSS0000113 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 4.9e-21 104.8 117 56.4
Gorai.001G233000 Gossypium raimondii HOM05D003904 ORTHO05D004378 4.9e-21 104.8 116 54.3
Aqoxy5G00012 Aquilegia oxysepala HOM05D003904 ORTHO05D004378 6.4e-21 104.4 127 52.8
Actinidia09474 Actinidia chinensis HOM05D003904 ORTHO05D004378 8.4e-21 104.0 116 55.2
RcHm_v2.0_Chr6g0284331 Rosa chinensis HOM05D003904 ORTHO05D004378 8.4e-21 104.0 110 59.1
Solyc09g059620.4 Solanum lycopersicum HOM05D003904 ORTHO05D004378 1.1e-20 103.6 121 53.7
FvH4_2g18710 Fragaria vesca HOM05D003904 ORTHO05D004378 1.4e-20 103.2 110 59.1
Sopen09g022790 Solanum pennellii HOM05D003904 ORTHO05D004378 1.4e-20 103.2 121 53.7
CiPaw.03G146900 Carya illinoinensis HOM05D003904 ORTHO05D004378 1.9e-20 102.8 115 56.5
Gohir.D07G206500 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.9e-20 102.8 111 55.0
Gohir.D07G206700 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.9e-20 102.8 116 53.4
Cfa002841 Carpinus fangiana HOM05D003904 ORTHO05D004378 5.4e-20 101.3 117 50.4
Cc01_g16830 Coffea canephora HOM05D003904 ORTHO05D004378 5.4e-20 101.3 116 51.7
Gorai.001G232800 Gossypium raimondii HOM05D003904 ORTHO05D004378 5.4e-20 101.3 111 55.0
CiPaw.04G104300 Carya illinoinensis HOM05D003904 ORTHO05D004378 7.1e-20 100.9 115 55.7
THA.LOC104818966 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 2.1e-19 99.4 117 53.0
CDE05G3121 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 2.7e-19 99.0 120 54.2
Migut.N00625 Erythranthe guttata HOM05D003904 ORTHO05D004378 2.7e-19 99.0 119 52.1
HanXRQChr01g0015241 Helianthus annuus HOM05D003904 ORTHO05D004378 3.5e-19 98.6 110 53.6
SGA_v2.0_scaffold3G01636 Striga asiatica HOM05D003904 ORTHO05D004378 7.9e-19 97.4 121 48.8
Actinidia23715 Actinidia chinensis HOM05D003904 ORTHO05D004378 1.3e-18 96.7 118 53.4
MELO3C021054.2 Cucumis melo HOM05D003904 ORTHO05D004378 1.3e-18 96.7 113 53.1
CsaV3_7G026020 Cucumis sativus L. HOM05D003904 ORTHO05D004378 1.3e-18 96.7 112 50.9
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.3e-18 96.7 115 54.8
CSS0026054 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 1.7e-18 96.3 143 46.9
Eucgr.K02144 Eucalyptus grandis HOM05D003904 ORTHO05D004378 1.7e-18 96.3 115 55.7
Rhsim01G0254500 Rhododendron simsii HOM05D003904 ORTHO05D004378 1.7e-18 96.3 133 48.1
THA.LOC104802662 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.7e-18 96.3 109 55.0
Oeu037383.1 Olea europaea HOM05D003904 ORTHO05D004378 3.0e-18 95.5 118 50.8
Sed0014618 Sechium edule HOM05D003904 ORTHO05D004378 5.1e-18 94.7 114 54.4
ECA248G3101 Erigeron canadensis HOM05D003904 ORTHO05D004378 6.6e-18 94.4 119 48.7
CDE05G2788 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 8.7e-18 94.0 124 49.2
PSO357G0115 Papaver somniferum HOM05D003904 ORTHO05D004378 1.1e-17 93.6 122 50.0
Thhalv10021536m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 1.5e-17 93.2 108 53.7
PSO170G6902 Papaver somniferum HOM05D003904 ORTHO05D004378 1.5e-17 93.2 122 49.2
THA.LOC104822497 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.5e-17 93.2 111 54.1
Sp3g06110 Schrenkiella parvula HOM05D003904 ORTHO05D004378 1.9e-17 92.8 108 52.8
Sabra14G0142300 Salix brachista HOM05D003904 ORTHO05D004378 3.3e-17 92.0 110 51.8
Lsat_1_v5_gn_5_180640 Lactuca sativa HOM05D003904 ORTHO05D004378 4.3e-17 91.7 127 50.4
TWI18G1339 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 4.3e-17 91.7 116 53.4
QL09p052136 Quercus lobata HOM05D003904 ORTHO05D004378 5.6e-17 91.3 114 54.4
QL09p053006 Quercus lobata HOM05D003904 ORTHO05D004378 5.6e-17 91.3 114 54.4
SGA_v2.0_scaffold18G08327 Striga asiatica HOM05D003904 ORTHO05D004378 7.3e-17 90.9 123 45.5
arahy.Tifrunner.gnm1.ann1.YG552F Arachis hypogaea HOM05D003904 ORTHO05D004378 9.6e-17 90.5 118 49.2
arahy.Tifrunner.gnm1.ann1.P0KJIP Arachis hypogaea HOM05D003904 ORTHO05D004378 1.3e-16 90.1 115 50.4
HPP92_021424 Vanilla planifolia HOM05D003904 ORTHO05D004378 1.3e-16 90.1 115 49.6
AL3G18420 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 2.1e-16 89.4 108 53.7
Zm00001eb085860 Zea mays HOM05D003904 ORTHO05D004378 3.6e-16 88.6 112 50.9
Nitab4.5_0000045g0390 Nicotiana tabacum HOM05D003904 ORTHO05D004378 6.2e-16 87.8 119 48.7
AT3G07170 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 8.1e-16 87.4 108 51.9
Carub.0003s0669 Capsella rubella HOM05D003904 ORTHO05D004378 8.1e-16 87.4 108 52.8
CARHR081810 Cardamine hirsuta HOM05D003904 ORTHO05D004378 1.1e-15 87.0 113 52.2
DCAR_004727 Daucus carota HOM05D003904 ORTHO05D004378 2.4e-15 85.9 121 43.0
Nitab4.5_0000345g0040 Nicotiana tabacum HOM05D003904 ORTHO05D004378 3.1e-15 85.5 161 41.0
TWI75G0190 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 3.1e-15 85.5 119 50.4
ClCG09G008850 Citrullus lanatus HOM05D003904 ORTHO05D004378 4.0e-15 85.1 113 50.4
MD10G1161300 Malus domestica HOM05D003904 ORTHO05D004378 5.3e-15 84.7 119 49.6
ATR0609G102 Amborella trichopoda HOM05D003904 ORTHO05D004378 6.9e-15 84.3 129 44.2
Nitab4.5_0002641g0160 Nicotiana tabacum HOM05D003904 ORTHO05D004378 6.9e-15 84.3 119 48.7
PGR044G0663 Punica granatum HOM05D003904 ORTHO05D004378 6.9e-15 84.3 118 45.8
Phvul.008G130000 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 9.0e-15 84.0 115 47.8
Sed0012318 Sechium edule HOM05D003904 ORTHO05D004378 2.0e-14 82.8 113 51.3
Zm00001eb420700 Zea mays HOM05D003904 ORTHO05D004378 2.0e-14 82.8 111 52.3
FAN15G2255 Fragaria x ananassa HOM05D003904 ORTHO05D004378 3.4e-14 82.0 109 51.4
FAN27G1941 Fragaria x ananassa HOM05D003904 ORTHO05D004378 3.4e-14 82.0 109 51.4
Lj3g0009581 Lotus japonicus HOM05D003904 ORTHO05D004378 3.4e-14 82.0 123 44.7
Lalb_Chr07g0194271 Lupinus albus HOM05D003904 ORTHO05D004378 3.4e-14 82.0 115 47.8
Rhsim13G0046900 Rhododendron simsii HOM05D003904 ORTHO05D004378 4.5e-14 81.6 146 43.2
TWI36G1515 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 4.5e-14 81.6 111 50.5
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 4.5e-14 81.6 118 44.9
Haze_24839 Corylus avellana HOM05D003904 ORTHO05D004378 7.6e-14 80.9 124 45.2
Migut.D02496 Erythranthe guttata HOM05D003904 ORTHO05D004378 7.6e-14 80.9 112 49.1
Lalb_Chr12g0209941 Lupinus albus HOM05D003904 ORTHO05D004378 9.9e-14 80.5 118 49.2
Ca_23234_v3 Cicer arietinum L. HOM05D003904 ORTHO05D004378 1.3e-13 80.1 110 49.1
Phvul.010G020800 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 1.3e-13 80.1 115 47.0
VMungo0331G0837 Vigna mungo HOM05D003904 ORTHO05D004378 1.3e-13 80.1 115 46.1
FAN24G3335 Fragaria x ananassa HOM05D003904 ORTHO05D004378 1.7e-13 79.7 109 50.5
Haze_24836 Corylus avellana HOM05D003904 ORTHO05D004378 2.2e-13 79.3 124 44.4
Glyma.08G349900 Glycine max HOM05D003904 ORTHO05D004378 2.2e-13 79.3 119 45.4
CSS0009711 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 2.9e-13 79.0 137 41.6
Nitab4.5_0002616g0050 Nicotiana tabacum HOM05D003904 ORTHO05D004378 4.9e-13 78.2 119 47.1
Medtr8g012995 Medicago truncatula HOM05D003904 ORTHO05D004378 1.9e-12 76.3 115 45.2
BolC5t34670H Brassica oleracea HOM05D003904 ORTHO05D004378 2.4e-12 75.9 119 45.4
vmacro02774 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 2.4e-12 75.9 177 37.3
TPR.G17124 Trifolium pratense HOM05D003904 ORTHO05D004378 3.2e-12 75.5 115 43.5
vmacro14743 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 3.2e-12 75.5 100 50.0
Psat4g200440 Pisum sativum HOM05D003904 ORTHO05D004378 5.4e-12 74.7 118 44.1
PGSC0003DMG400017482 Solanum tuberosum HOM05D003904 ORTHO05D004378 5.4e-12 74.7 96 47.9
unitig_736.g22341 Utricularia gibba HOM05D003904 ORTHO05D004378 7.1e-12 74.3 117 42.7
Sabra02G0186200 Salix brachista HOM05D003904 ORTHO05D004378 2.1e-11 72.8 87 52.9
Glyma.03G064800 Glycine max HOM05D003904 ORTHO05D004378 2.7e-11 72.4 115 47.0
C05p60200 Brassica napus HOM05D003904 ORTHO05D004378 3.5e-11 72.0 117 44.4
COL.COLO4_15645 Corchorus olitorius HOM05D003904 ORTHO05D004378 4.6e-11 71.6 90 54.4
C03p42720 Brassica napus HOM05D003904 ORTHO05D004378 6.0e-11 71.2 118 41.5
BolC3t16542H Brassica oleracea HOM05D003904 ORTHO05D004378 6.0e-11 71.2 118 41.5
CSS0042014 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 6.0e-11 71.2 91 51.6
SGA_v2.0_scaffold6G03227 Striga asiatica HOM05D003904 ORTHO05D004378 7.9e-11 70.9 119 42.9
BcaC05g29749 Brassica carinata HOM05D003904 ORTHO05D004378 1.8e-10 69.7 117 41.9
BraA05t22830Z Brassica rapa HOM05D003904 ORTHO05D004378 1.8e-10 69.7 108 46.3
Gohir.A07G200150 Gossypium hirsutum HOM05D003904 ORTHO05D004378 2.3e-10 69.3 98 46.9
BcaC05g29846 Brassica carinata HOM05D003904 ORTHO05D004378 3.0e-10 68.9 117 41.9
A03p35130 Brassica napus HOM05D003904 ORTHO05D004378 6.7e-10 67.8 129 38.0
Glyma.16G100600 Glycine max HOM05D003904 ORTHO05D004378 1.1e-09 67.0 116 44.0
Carub.0008s0842 Capsella rubella HOM05D003904 ORTHO05D004378 1.5e-09 66.6 111 41.4
Glyma.18G166400 Glycine max HOM05D003904 ORTHO05D004378 1.9e-09 66.2 75 52.0
Cpa.g.sc8.132 Carica papaya HOM05D003904 ORTHO05D004378 1.3e-08 63.5 90 48.9
BcaC06g30768 Brassica carinata HOM05D003904 ORTHO05D004378 6.2e-08 61.2 111 40.5
Sp2g19090 Schrenkiella parvula HOM05D003904 ORTHO05D004378 1.8e-07 59.7 108 42.6
Actinidia31468 Actinidia chinensis HOM05D003904 ORTHO05D004378 4.0e-07 58.5 102 43.1
Aa31LG5G17730 Aethionema arabicum HOM05D003904 ORTHO05D004378 5.3e-07 58.2 84 46.4
CARHR183220 Cardamine hirsuta HOM05D003904 ORTHO05D004378 9.0e-07 57.4 105 39.0
AT5G48680 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 1.2e-06 57.0 118 37.3
AL8G21740 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 1.5e-06 56.6 109 40.4
C07p39350 Brassica napus HOM05D003904 ORTHO05D004378 2.0e-06 56.2 118 39.0
BraA03t12693Z Brassica rapa HOM05D003904 ORTHO05D004378 2.0e-06 56.2 89 40.4


User provided reference genes

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