Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 0.0e+00 1744.2 863 100.0
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1229.5 893 71.8
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1163.7 911 67.5
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1137.1 897 66.4
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1103.2 894 64.4
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1092.4 905 63.2
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1088.9 903 63.0
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1088.6 833 66.4
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1084.7 893 63.6
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1083.6 846 65.0
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1083.6 894 63.3
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1082.0 894 63.3
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1081.2 890 64.0
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1080.9 873 64.1
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 0.0e+00 1079.7 717 78.4
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1077.8 894 63.1
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1075.5 857 64.3
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 5.9e-312 1073.5 876 62.9
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 1.2e-311 1072.8 894 63.0
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 1.2e-311 1072.8 830 65.3
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 5.3e-311 1070.8 847 63.6
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 5.8e-310 1067.4 845 65.0
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 7.6e-310 1067.0 883 62.9
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 1.7e-309 1065.8 901 62.3
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 6.4e-309 1063.9 914 60.8
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 1.4e-308 1062.8 892 62.6
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 1.9e-308 1062.4 903 61.7
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 1.6e-307 1059.3 895 61.9
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 2.1e-307 1058.9 897 61.6
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 4.6e-307 1057.7 902 61.6
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 8.7e-306 1053.5 900 61.0
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 1.9e-305 1052.4 883 61.9
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 1.6e-304 1049.3 850 64.1
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 3.7e-304 1048.1 903 61.9
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 1.2e-302 1043.1 891 61.7
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 1.5e-302 1042.7 850 62.0
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 2.0e-302 1042.3 879 61.3
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 2.6e-302 1042.0 894 60.5
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 3.4e-302 1041.6 874 61.6
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 4.5e-302 1041.2 867 61.4
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 7.6e-302 1040.4 844 62.7
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 1.3e-301 1039.6 840 62.5
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 2.9e-301 1038.5 832 63.1
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 1.4e-300 1036.2 872 60.6
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 2.5e-300 1035.4 896 60.2
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 9.3e-300 1033.5 906 60.0
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 9.3e-300 1033.5 911 60.6
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 1.6e-299 1032.7 893 60.5
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 2.1e-299 1032.3 869 61.0
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 2.1e-299 1032.3 873 61.3
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 1.3e-298 1029.6 875 60.8
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 1.3e-298 1029.6 899 61.2
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 2.3e-298 1028.9 869 61.0
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 1.5e-297 1026.2 865 61.0
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 2.5e-297 1025.4 856 61.3
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 4.3e-297 1024.6 837 62.7
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 9.7e-297 1023.5 838 62.2
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 1.3e-296 1023.1 830 62.4
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 1.3e-296 1023.1 830 63.0
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 8.2e-296 1020.4 849 61.6
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 1.4e-295 1019.6 885 59.5
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 1.8e-295 1019.2 842 60.9
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 5.3e-295 1017.7 838 61.9
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 4.5e-294 1014.6 859 61.0
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 5.9e-294 1014.2 911 60.0
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 3.8e-293 1011.5 934 57.9
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 5.0e-293 1011.1 897 59.3
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 6.5e-293 1010.7 898 59.0
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 1.4e-292 1009.6 837 63.6
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 3.2e-292 1008.4 897 59.6
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 4.6e-291 1004.6 893 59.2
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 4.6e-291 1004.6 849 60.4
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 6.1e-291 1004.2 898 59.5
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 3.0e-290 1001.9 888 59.3
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 8.8e-290 1000.3 888 59.1
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 8.8e-290 1000.3 894 59.1
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 1.1e-289 1000.0 881 59.5
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 5.7e-289 997.7 881 58.9
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 2.8e-288 995.3 906 58.2
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 4.1e-287 991.5 752 67.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.0e-286 989.2 869 60.5
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 3.8e-285 984.9 910 57.0
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 7.2e-284 980.7 854 60.2
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 8.8e-282 973.8 863 58.9
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 3.2e-276 955.3 747 64.3
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 9.4e-276 953.7 832 59.9
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 9.7e-273 943.7 724 66.7
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 6.3e-272 941.0 753 64.0
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 4.1e-271 938.3 748 63.9
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 2.7e-267 925.6 814 58.5
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 3.7e-264 915.2 848 56.8
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 4.8e-264 914.8 746 62.1
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 2.0e-254 882.9 686 65.5
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 3.0e-237 825.9 833 50.8
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 3.1e-234 815.8 832 51.1
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 6.4e-232 808.1 837 51.0
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.0e-221 772.7 667 60.3
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 1.1e-220 770.8 696 57.6
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.6e-203 712.6 684 53.7
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 7.4e-188 661.8 738 47.3
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 1.4e-170 604.4 530 58.3
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 9.8e-140 501.9 627 45.8
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 3.5e-129 466.8 882 36.1
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 5.2e-109 399.8 382 52.9
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.8e-94 350.1 270 64.8
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 1.8e-93 348.2 281 63.3
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 4.6e-73 280.4 350 46.9
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.6e-65 255.4 287 49.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.5e-63 248.8 320 45.6
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.0e-43 183.0 129 65.1
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.9e-43 181.4 148 64.2
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.4e-40 172.6 138 59.4
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 3.1e-29 134.8 122 59.8
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 4.5e-28 131.0 135 51.1
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 6.5e-27 127.1 193 40.9
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 4.7e-25 120.9 107 52.3
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 3.1e-21 108.2 136 44.9
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.0e-20 105.5 62 82.3
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 3.0e-16 91.7 56 78.6
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 3.2e-13 81.6 155 36.8
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 3.9e-11 74.7 47 68.1
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 5.0e-11 74.3 43 74.4
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 6.8e-08 63.9 41 73.2
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.2e-07 63.2 66 53.0


User provided reference genes

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