Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62034124 Chenopodium quinoa HOM05D000234 ORTHO05D044008 3.8e-124 448.7 330 100.0
AUR62042862 Chenopodium quinoa HOM05D000234 ORTHO05D044008 2.3e-36 157.1 287 51.6
CSS0034580 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.2e-18 98.2 158 41.8
Manes.07G023100 Manihot esculenta HOM05D000234 ORTHO05D000335 3.6e-18 96.7 143 36.4
CSS0022104 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.4e-17 94.7 177 40.1
CSS0046238 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 1.4e-17 94.7 158 41.1
EL10Ac4g08821 Beta vulgaris HOM05D000234 ORTHO05D000335 2.3e-17 94.0 186 37.6
Sc06g0002920 Simmondsia chinensis HOM05D000234 ORTHO05D000335 2.3e-17 94.0 169 37.3
Nn7g38057 Nelumbo nucifera HOM05D000234 ORTHO05D000335 4.0e-17 93.2 138 36.2
CSS0024752 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 5.2e-17 92.8 157 39.5
CSS0034476 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 5.2e-17 92.8 157 39.5
CANSAT35G0458 Cannabis sativa HOM05D000234 ORTHO05D000335 1.2e-16 91.7 172 38.4
Atru.chr10.596 Acer truncatum HOM05D000234 ORTHO05D000335 2.6e-16 90.5 173 38.2
Nn7g38048 Nelumbo nucifera HOM05D000234 ORTHO05D000335 5.8e-16 89.4 138 34.8
Thecc.06G137800 Theobroma cacao HOM05D000234 ORTHO05D000335 5.8e-16 89.4 144 38.2
Cfa000905 Carpinus fangiana HOM05D000234 ORTHO05D000335 7.6e-16 89.0 133 39.1
Duzib235G1469 Durio zibethinus HOM05D000234 ORTHO05D000335 9.9e-16 88.6 157 35.0
MD10G1236300 Malus domestica HOM05D000234 ORTHO05D000335 9.9e-16 88.6 146 34.9
Prupe.4G108000 Prunus persica HOM05D000234 ORTHO05D000335 1.3e-15 88.2 146 34.2
QL07p031563 Quercus lobata HOM05D000234 ORTHO05D000335 1.3e-15 88.2 142 38.0
Dinv11861 Davidia involucrata HOM05D000234 ORTHO05D000335 1.7e-15 87.8 139 37.4
Eucgr.D01097 Eucalyptus grandis HOM05D000234 ORTHO05D000335 1.7e-15 87.8 135 34.8
Nitab4.5_0002574g0060 Nicotiana tabacum HOM05D000234 ORTHO05D000335 1.7e-15 87.8 154 37.7
Potri.012G118700 Populus trichocarpa HOM05D000234 ORTHO05D000335 1.7e-15 87.8 143 36.4
CiPaw.09G079500 Carya illinoinensis HOM05D000234 ORTHO05D000335 2.2e-15 87.4 143 34.3
MD05G1256100 Malus domestica HOM05D000234 ORTHO05D000335 2.2e-15 87.4 146 36.3
Hma1.2p1_0092F.1_g046850 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 2.9e-15 87.0 135 36.3
Duzib235G0982 Durio zibethinus HOM05D000234 ORTHO05D000335 3.7e-15 86.7 133 39.1
Peaxi162Scf00623g00518 Petunia axillaris HOM05D000234 ORTHO05D000335 4.9e-15 86.3 149 38.3
Thecc.06G138000 Theobroma cacao HOM05D000234 ORTHO05D000335 4.9e-15 86.3 143 34.3
Prupe.4G108100 Prunus persica HOM05D000234 ORTHO05D000335 6.4e-15 85.9 146 33.6
Haze_05576 Corylus avellana HOM05D000234 ORTHO05D000335 8.4e-15 85.5 142 35.9
QL07p032335 Quercus lobata HOM05D000234 ORTHO05D000335 8.4e-15 85.5 156 34.0
RcHm_v2.0_Chr5g0019581 Rosa chinensis HOM05D000234 ORTHO05D000335 8.4e-15 85.5 147 34.7
TWI63G1642 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 8.4e-15 85.5 132 34.1
Haze_05654 Corylus avellana HOM05D000234 ORTHO05D000335 1.1e-14 85.1 143 38.5
Lj4A490T23 Lonicera japonica HOM05D000234 ORTHO05D000335 1.1e-14 85.1 132 37.9
QL07p030475 Quercus lobata HOM05D000234 ORTHO05D000335 1.1e-14 85.1 142 37.3
CiPaw.10G066000 Carya illinoinensis HOM05D000234 ORTHO05D000335 1.4e-14 84.7 131 35.1
Ciclev10014144m.g Citrus clementina HOM05D000234 ORTHO05D000335 1.4e-14 84.7 145 35.9
Glyma.15G126700 Glycine max HOM05D000234 ORTHO05D000335 1.4e-14 84.7 137 35.0
Lj1C1142T12 Lonicera japonica HOM05D000234 ORTHO05D000335 1.4e-14 84.7 132 37.1
Nitab4.5_0005030g0010 Nicotiana tabacum HOM05D000234 ORTHO05D000335 1.4e-14 84.7 154 37.0
Ciclev10014153m.g Citrus clementina HOM05D000234 ORTHO05D000335 1.9e-14 84.3 146 34.9
FvH4_3g11980 Fragaria vesca HOM05D000234 ORTHO05D000335 2.4e-14 84.0 147 37.4
Sabra12G0089900 Salix brachista HOM05D000234 ORTHO05D000335 2.4e-14 84.0 161 34.2
DCAR_007791 Daucus carota HOM05D000234 ORTHO05D000335 3.2e-14 83.6 132 39.4
ECA234G4015 Erigeron canadensis HOM05D000234 ORTHO05D000335 3.2e-14 83.6 145 41.4
Eucgr.D00106 Eucalyptus grandis HOM05D000234 ORTHO05D000335 3.2e-14 83.6 139 33.1
MSTRG.7582 Avicennia marina HOM05D000234 ORTHO05D000335 4.1e-14 83.2 163 36.8
Duzib192G0161 Durio zibethinus HOM05D000234 ORTHO05D000335 5.4e-14 82.8 145 35.9
Hma1.2p1_0065F.1_g035340 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 5.4e-14 82.8 134 35.1
Hund06836 Selenicereus undatus HOM05D000234 ORTHO05D000335 5.4e-14 82.8 192 34.4
Manes.16G048683 Manihot esculenta HOM05D000234 ORTHO05D000335 7.1e-14 82.4 159 34.0
Eucgr.D00109 Eucalyptus grandis HOM05D000234 ORTHO05D000335 9.2e-14 82.0 140 33.6
Lj8C254T9 Lonicera japonica HOM05D000234 ORTHO05D000335 9.2e-14 82.0 157 36.3
GSVIVG01026268001 Vitis vinifera HOM05D000234 ORTHO05D000335 9.2e-14 82.0 137 33.6
FAN21G3804 Fragaria x ananassa HOM05D000234 ORTHO05D000335 1.2e-13 81.6 147 36.1
Lj4g0004639 Lotus japonicus HOM05D000234 ORTHO05D000335 1.2e-13 81.6 130 35.4
TWI38G0717 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 1.6e-13 81.3 145 37.9
Dinv01303 Davidia involucrata HOM05D000234 ORTHO05D000335 2.1e-13 80.9 169 35.5
Dinv01453 Davidia involucrata HOM05D000234 ORTHO05D000335 2.1e-13 80.9 169 35.5
Dinv11857 Davidia involucrata HOM05D000234 ORTHO05D000335 2.1e-13 80.9 146 34.2
Dinv11860 Davidia involucrata HOM05D000234 ORTHO05D000335 2.1e-13 80.9 130 36.2
Gohir.A06G140700 Gossypium hirsutum HOM05D000234 ORTHO05D000335 3.5e-13 80.1 144 34.7
Thecc.06G137400 Theobroma cacao HOM05D000234 ORTHO05D000335 4.6e-13 79.7 144 36.1
FAN16G2044 Fragaria x ananassa HOM05D000234 ORTHO05D000335 7.8e-13 79.0 156 34.0
Gorai.010G171800 Gossypium raimondii HOM05D000234 ORTHO05D000335 7.8e-13 79.0 144 35.4
TWI63G0586 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 7.8e-13 79.0 172 34.3
DCAR_004316 Daucus carota HOM05D000234 ORTHO05D000335 1.3e-12 78.2 140 35.0
Lalb_Chr15g0088591 Lupinus albus HOM05D000234 ORTHO05D000335 1.3e-12 78.2 135 35.6
Carub.0001s2971 Capsella rubella HOM05D000234 ORTHO05D000335 1.7e-12 77.8 147 35.4
Gohir.D06G147400 Gossypium hirsutum HOM05D000234 ORTHO05D000335 1.7e-12 77.8 144 34.7
Hma1.2p1_0065F.1_g035330 Hydrangea macrophylla HOM05D000234 ORTHO05D000335 1.7e-12 77.8 134 33.6
arahy.Tifrunner.gnm1.ann1.M7MYIY Arachis hypogaea HOM05D000234 ORTHO05D000335 2.3e-12 77.4 137 34.3
TAR624G0568 Trochodendron aralioides HOM05D000234 ORTHO05D000335 2.3e-12 77.4 133 33.1
A05p18710 Brassica napus HOM05D000234 ORTHO05D000335 3.0e-12 77.0 156 34.0
BraA05t20765Z Brassica rapa HOM05D000234 ORTHO05D000335 3.0e-12 77.0 156 34.0
Lalb_Chr09g0328791 Lupinus albus HOM05D000234 ORTHO05D000335 3.9e-12 76.6 131 33.6
GSVIVG01026261001 Vitis vinifera HOM05D000234 ORTHO05D000335 3.9e-12 76.6 145 33.8
Dinv11858 Davidia involucrata HOM05D000234 ORTHO05D000335 5.1e-12 76.3 143 33.6
C06p14370 Brassica napus HOM05D000234 ORTHO05D000335 8.6e-12 75.5 130 34.6
CAN.G1202.12 Capsicum annuum HOM05D000234 ORTHO05D000335 8.6e-12 75.5 134 37.3
Lsat_1_v5_gn_4_22000 Lactuca sativa HOM05D000234 ORTHO05D000335 8.6e-12 75.5 134 38.1
PGR083G1759 Punica granatum HOM05D000234 ORTHO05D000335 8.6e-12 75.5 135 33.3
HanXRQChr16g0528251 Helianthus annuus HOM05D000234 ORTHO05D000335 1.5e-11 74.7 137 40.9
Potri.015G117401 Populus trichocarpa HOM05D000234 ORTHO05D000335 1.5e-11 74.7 177 32.2
Cc09_g06770 Coffea canephora HOM05D000234 ORTHO05D000335 1.9e-11 74.3 198 34.8
SalBow8G5357 Salvia bowleyana HOM05D000234 ORTHO05D000335 1.9e-11 74.3 132 36.4
Lj6g0020367 Lotus japonicus HOM05D000234 ORTHO05D000335 2.5e-11 73.9 147 32.0
AL1G49770 Arabidopsis lyrata HOM05D000234 ORTHO05D000335 3.3e-11 73.6 134 36.6
MD10G1236400 Malus domestica HOM05D000234 ORTHO05D000335 3.3e-11 73.6 146 31.5
Oeu008718.1 Olea europaea HOM05D000234 ORTHO05D000335 3.3e-11 73.6 178 32.6
Psat7g132600 Pisum sativum HOM05D000234 ORTHO05D000335 4.3e-11 73.2 131 37.4
Sp1g27110 Schrenkiella parvula HOM05D000234 ORTHO05D000335 4.3e-11 73.2 163 31.9
Solyc02g069260.3 Solanum lycopersicum HOM05D000234 ORTHO05D000335 4.3e-11 73.2 145 33.1
Sopen02g018420 Solanum pennellii HOM05D000234 ORTHO05D000335 4.3e-11 73.2 145 33.1
Actinidia35148 Actinidia chinensis HOM05D000234 ORTHO05D000335 5.6e-11 72.8 134 35.8
CARHR030750 Cardamine hirsuta HOM05D000234 ORTHO05D000335 5.6e-11 72.8 133 33.8
Actinidia35150 Actinidia chinensis HOM05D000234 ORTHO05D000335 7.3e-11 72.4 134 36.6
Migut.M01963 Erythranthe guttata HOM05D000234 ORTHO05D000335 7.3e-11 72.4 152 34.9
Cc09_g06780 Coffea canephora HOM05D000234 ORTHO05D000335 9.6e-11 72.0 133 33.8
Sabra15G0135600 Salix brachista HOM05D000234 ORTHO05D000335 1.2e-10 71.6 167 31.1
TAR626G0519 Trochodendron aralioides HOM05D000234 ORTHO05D000335 1.2e-10 71.6 169 29.6
Aa31LG2G14600 Aethionema arabicum HOM05D000234 ORTHO05D000335 1.6e-10 71.2 130 36.9
BcaC08g44027 Brassica carinata HOM05D000234 ORTHO05D000335 1.6e-10 71.2 160 30.0
SalBow8G0274 Salvia bowleyana HOM05D000234 ORTHO05D000335 1.6e-10 71.2 130 35.4
Medtr2g028910 Medicago truncatula HOM05D000234 ORTHO05D000335 2.1e-10 70.9 144 31.2
Oeu045613.1 Olea europaea HOM05D000234 ORTHO05D000335 2.1e-10 70.9 145 34.5
PGSC0003DMG400021213 Solanum tuberosum HOM05D000234 ORTHO05D000335 2.1e-10 70.9 149 34.2
AT1G31280 Arabidopsis thaliana HOM05D000234 ORTHO05D000335 2.8e-10 70.5 143 33.6
GSVIVG01026264001 Vitis vinifera HOM05D000234 ORTHO05D000335 2.8e-10 70.5 145 30.3
Nn7g38056 Nelumbo nucifera HOM05D000234 ORTHO05D000335 3.6e-10 70.1 87 36.8
SGA_v2.0_scaffold535G52768 Striga asiatica HOM05D000234 ORTHO05D000335 3.6e-10 70.1 167 33.5
HanXRQChr16g0528211 Helianthus annuus HOM05D000234 ORTHO05D000335 4.7e-10 69.7 135 35.6
Lsat_1_v5_gn_4_22040 Lactuca sativa HOM05D000234 ORTHO05D000335 4.7e-10 69.7 141 38.3
Medtr4g083610 Medicago truncatula HOM05D000234 ORTHO05D000335 4.7e-10 69.7 132 32.6
Rhsim13G0129900 Rhododendron simsii HOM05D000234 ORTHO05D000335 6.2e-10 69.3 153 28.1
TPR.G34036 Trifolium pratense HOM05D000234 ORTHO05D000335 6.2e-10 69.3 131 32.1
Os04g0615700 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 8.1e-10 68.9 138 31.2
vmacro03499 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 1.1e-09 68.6 153 28.1
BcaB02g10962 Brassica carinata HOM05D000234 ORTHO05D000335 1.4e-09 68.2 144 34.0
Thhalv10006643m.g Eutrema salsugineum HOM05D000234 ORTHO05D000335 1.4e-09 68.2 141 33.3
C05p30470 Brassica napus HOM05D000234 ORTHO05D000335 1.8e-09 67.8 163 31.9
BolC7t42233H Brassica oleracea HOM05D000234 ORTHO05D000335 1.8e-09 67.8 163 31.9
Actinidia22377 Actinidia chinensis HOM05D000234 ORTHO05D000335 2.4e-09 67.4 138 29.0
AT1G31290 Arabidopsis thaliana HOM05D000234 ORTHO05D000335 2.4e-09 67.4 160 33.8
BcaB07g32789 Brassica carinata HOM05D000234 ORTHO05D000335 2.4e-09 67.4 163 32.5
AL1G49760 Arabidopsis lyrata HOM05D000234 ORTHO05D000335 3.1e-09 67.0 159 34.6
BcaC05g27157 Brassica carinata HOM05D000234 ORTHO05D000335 4.0e-09 66.6 163 31.3
VMungo0251G2680 Vigna mungo HOM05D000234 ORTHO05D000335 4.0e-09 66.6 142 33.1
Glyma.20G022900 Glycine max HOM05D000234 ORTHO05D000335 5.2e-09 66.2 131 30.5
QL07p032350 Quercus lobata HOM05D000234 ORTHO05D000335 5.2e-09 66.2 116 35.3
TPR.G17524 Trifolium pratense HOM05D000234 ORTHO05D000335 5.2e-09 66.2 153 27.5
Ca_11351_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 6.8e-09 65.9 142 31.0
arahy.Tifrunner.gnm1.ann1.B23GPN Arachis hypogaea HOM05D000234 ORTHO05D000335 8.9e-09 65.5 140 32.1
THA.LOC104798616 Tarenaya hassleriana HOM05D000234 ORTHO05D000335 2.0e-08 64.3 155 30.3
Sp1g27100 Schrenkiella parvula HOM05D000234 ORTHO05D000335 3.4e-08 63.5 169 31.4
arahy.Tifrunner.gnm1.ann1.MFKE4U Arachis hypogaea HOM05D000234 ORTHO05D000335 4.4e-08 63.2 140 31.4
Psat1g169880 Pisum sativum HOM05D000234 ORTHO05D000335 5.8e-08 62.8 147 28.6
PGSC0003DMG400021211 Solanum tuberosum HOM05D000234 ORTHO05D000335 5.8e-08 62.8 133 33.8
Sopen02g018430 Solanum pennellii HOM05D000234 ORTHO05D000335 7.6e-08 62.4 146 28.8
Cfa000958 Carpinus fangiana HOM05D000234 ORTHO05D000335 9.9e-08 62.0 96 36.5
Sopen02g018440 Solanum pennellii HOM05D000234 ORTHO05D000335 1.7e-07 61.2 133 34.6
A09p34960 Brassica napus HOM05D000234 ORTHO05D000335 2.2e-07 60.8 164 29.9
BraA09t39027Z Brassica rapa HOM05D000234 ORTHO05D000335 2.2e-07 60.8 164 29.9
Solyc02g069280.2 Solanum lycopersicum HOM05D000234 ORTHO05D000335 2.2e-07 60.8 133 33.8
Solyc02g069270.2 Solanum lycopersicum HOM05D000234 ORTHO05D000335 3.8e-07 60.1 145 27.6
Migut.M01964 Erythranthe guttata HOM05D000234 ORTHO05D000335 4.9e-07 59.7 164 33.5
Phvul.002G100100 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 4.9e-07 59.7 143 32.9
vmacro06212 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 4.2e-06 56.6 116 32.8
SEGI_27000 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 9.3e-06 55.5 169 28.4


User provided reference genes

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