Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 2013.0 1026 100.0
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1901.3 1024 94.5
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1793.9 1026 89.5
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1701.8 1068 82.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1488.0 1035 74.9
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1451.4 1048 73.5
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1426.8 924 79.9
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1414.4 1036 70.2
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1404.8 1038 69.5
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1404.4 1043 69.1
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1035 70.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1389.4 1025 69.6
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1045 68.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1378.2 1020 69.3
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1039 68.3
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 1043 68.3
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1369.4 1034 68.7
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1053 67.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1032 67.9
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1364.4 1033 68.3
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1364.0 1039 68.8
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1363.2 1038 68.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1362.1 1049 67.9
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1039 68.0
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 1043 67.8
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1358.6 1049 67.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1350.9 1012 68.8
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1349.3 1030 67.6
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1348.2 1047 66.9
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1038 67.7
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1345.9 1012 68.6
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1345.1 1040 66.7
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1058 65.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1036 68.1
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1034 68.0
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 1033 67.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1038 67.1
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1031 67.3
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1340.9 1033 67.6
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1340.9 1056 67.2
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1031 67.6
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1089 64.7
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 1044 66.8
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1336.2 1048 66.4
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1334.7 1025 67.5
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1327.0 1039 66.5
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1326.6 1012 68.2
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 1029 66.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1323.1 1025 67.6
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1322.4 1014 67.8
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1321.6 1024 67.2
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1032 67.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 987 68.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1039 66.9
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1039 66.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 1028 67.4
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1034 66.4
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1313.1 1038 66.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1312.4 1041 65.8
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1312.4 1033 66.1
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1020 67.0
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1039 66.8
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1311.6 1041 65.5
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1024 67.5
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1309.7 1033 67.1
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 1027 67.2
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1307.7 1046 66.1
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1038 66.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1044 66.0
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1307.0 1033 67.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1306.6 1031 65.7
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1305.8 1045 66.2
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1305.8 1024 67.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1303.9 1066 65.1
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1303.9 1031 65.9
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1010 67.0
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 1030 66.4
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1300.0 1026 66.0
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1299.3 1030 66.8
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1297.3 1012 67.1
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1291.2 1026 65.4
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1290.4 1036 66.9
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1290.0 1027 65.4
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1290.0 1073 64.6
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1290.0 1040 64.9
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1288.1 1038 65.3
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 1040 66.1
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1281.2 943 69.0
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1279.2 1041 64.8
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1277.3 1032 65.7
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1275.4 1029 65.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1270.4 1033 65.5
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1266.1 1033 65.4
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1029 64.2
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1022 63.8
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1264.2 1032 65.7
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1263.8 1033 65.4
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1263.1 1022 65.8
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1262.7 1029 65.3
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1253.8 1038 65.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1248.8 1042 64.6
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1247.3 1047 64.2
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1243.0 1042 64.3
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1234.2 893 70.8
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1228.8 893 71.0
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1218.0 1010 64.0
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1215.3 1040 62.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1214.9 918 69.6
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1214.9 1031 63.5
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1202.6 1026 62.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1194.9 1027 63.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1192.6 1033 63.0
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1191.0 1027 63.2
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1189.9 1030 62.9
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1181.8 1029 61.3
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1179.9 1043 62.1
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1176.8 996 62.8
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1171.8 1009 62.2
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1169.5 1026 61.6
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1149.8 1023 59.9
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1137.1 1020 61.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 1044 60.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1112.1 1038 59.2
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1093.6 1047 57.9
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1085.5 1008 58.0
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 8.4e-311 1070.5 1075 55.2
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.6e-309 1065.4 1060 54.8
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 8.2e-303 1043.9 860 64.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.3e-276 956.1 853 60.4
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.0e-273 947.2 915 54.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 9.8e-272 940.6 1054 53.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.0e-265 920.6 1003 52.5
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 4.0e-265 918.7 807 63.6
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.5e-256 890.2 1002 50.9
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.5e-251 873.6 1056 48.5
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.3e-244 850.5 742 64.2
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.9e-243 846.7 719 63.8
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.9e-239 832.8 990 48.1
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.2e-238 828.9 986 48.0
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 5.6e-227 792.0 1012 45.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 5.1e-220 768.8 834 50.8
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.0e-212 744.6 819 50.8
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.5e-192 677.6 918 44.8
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 6.7e-188 662.1 727 56.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 2.6e-187 660.2 676 54.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.0e-183 648.3 829 48.3
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.5e-160 569.7 949 39.3
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.6e-159 565.8 636 51.7
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.4e-148 531.6 668 48.8
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.3e-142 510.4 635 48.0
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.6e-141 506.9 640 46.6
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.6e-131 474.2 1161 32.6
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.5e-118 431.0 403 55.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 2.6e-115 421.0 646 42.3
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 3.1e-100 370.9 573 41.4
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-97 362.5 283 68.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 9.7e-86 322.8 237 73.0
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 5.1e-79 300.4 349 50.1
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 8.2e-77 293.1 274 60.6
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.2e-69 268.5 968 28.8
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.1e-62 246.1 295 50.8
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 1.2e-51 209.5 528 30.5
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 2.3e-47 195.3 887 24.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.6e-46 191.8 213 47.4
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.5e-43 181.0 216 45.8
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.9e-41 175.6 180 51.1
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.8e-40 171.8 158 55.1
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-38 166.4 152 55.9
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.5e-33 149.4 185 47.6
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.0e-31 143.3 139 51.1
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 6.8e-31 140.6 138 52.9
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.3e-25 121.3 123 51.2
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 4.6e-19 101.3 124 43.5
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.0e-18 100.1 101 48.5
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 6.2e-16 90.9 62 72.6
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 2.0e-14 85.9 63 73.0
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.7e-10 72.8 66 56.1


User provided reference genes

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