Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.9e-168 595.1 294 100.0
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 6.7e-141 504.2 261 95.8
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 2.0e-116 422.9 261 84.7
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.2e-105 387.1 272 76.1
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.7e-105 386.0 251 80.5
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 3.5e-105 385.6 258 76.7
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.8e-102 375.9 210 89.5
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 6.1e-102 374.8 250 78.0
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.3e-101 372.9 254 75.6
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 2.3e-101 372.9 263 74.5
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 4.0e-101 372.1 259 76.4
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 6.8e-101 371.3 244 78.3
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 8.9e-101 370.9 238 79.0
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.5e-100 370.2 259 75.7
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 2.0e-100 369.8 257 75.1
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-99 367.1 268 74.3
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.3e-99 367.1 224 83.5
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.7e-99 366.7 216 85.2
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.2e-99 366.3 293 68.6
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 4.9e-99 365.2 244 77.9
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.4e-99 364.8 265 74.3
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 8.3e-99 364.4 272 72.1
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.1e-98 364.0 237 78.5
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.1e-98 364.0 245 77.1
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.1e-98 364.0 218 83.9
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.1e-98 364.0 252 75.4
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 1.1e-98 364.0 258 75.6
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.4e-98 363.6 252 75.4
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 1.4e-98 363.6 262 71.8
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.4e-98 363.6 219 82.2
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.8e-98 363.2 268 70.9
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.4e-98 362.8 250 76.4
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.2e-98 362.5 252 75.4
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 5.4e-98 361.7 222 82.4
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 5.4e-98 361.7 259 73.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 5.4e-98 361.7 243 77.4
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 7.0e-98 361.3 271 70.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 9.2e-98 360.9 229 78.6
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 9.2e-98 360.9 268 70.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 9.2e-98 360.9 225 82.2
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 9.2e-98 360.9 253 74.3
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.2e-97 360.5 211 84.4
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.2e-97 360.5 270 69.6
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.2e-97 360.5 217 82.9
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.6e-97 360.1 253 73.9
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 1.6e-97 360.1 255 74.9
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.6e-97 360.1 270 70.0
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.0e-97 359.8 262 72.5
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.7e-97 359.4 245 76.7
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 4.6e-97 358.6 221 81.4
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.9e-97 358.2 218 82.6
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 7.8e-97 357.8 253 73.5
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 7.8e-97 357.8 217 82.9
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 1.3e-96 357.1 266 72.2
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.3e-96 357.1 228 78.9
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.7e-96 356.7 268 71.3
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.7e-96 356.7 212 83.0
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.7e-96 356.7 267 72.7
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.3e-96 356.3 274 70.1
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 3.0e-96 355.9 219 82.2
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 5.0e-96 355.1 260 72.3
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 5.0e-96 355.1 262 69.8
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 6.6e-96 354.8 275 68.4
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 6.6e-96 354.8 261 72.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 8.6e-96 354.4 262 69.8
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 8.6e-96 354.4 214 82.2
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.1e-95 354.0 218 80.7
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.1e-95 354.0 213 84.0
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 1.1e-95 354.0 257 72.8
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.5e-95 353.6 262 69.5
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.5e-95 352.8 212 84.0
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 2.5e-95 352.8 251 72.9
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.5e-95 352.8 272 68.0
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.3e-95 352.4 244 73.4
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 3.3e-95 352.4 265 71.3
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 5.6e-95 351.7 246 72.0
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 5.6e-95 351.7 212 83.5
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 7.3e-95 351.3 218 80.7
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 7.3e-95 351.3 269 71.0
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 9.5e-95 350.9 257 72.4
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 1.2e-94 350.5 260 72.7
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.1e-94 349.7 223 81.2
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.8e-94 349.4 252 71.8
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 3.6e-94 349.0 286 65.4
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 4.7e-94 348.6 273 67.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 6.2e-94 348.2 274 67.2
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 8.0e-94 347.8 254 71.7
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 8.0e-94 347.8 258 70.9
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.0e-93 347.4 250 71.2
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 1.0e-93 347.4 215 81.4
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 1.4e-93 347.1 218 79.8
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.8e-93 346.7 265 69.1
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.3e-93 346.3 218 80.3
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.3e-93 346.3 195 87.7
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.1e-93 345.9 217 79.3
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 3.1e-93 345.9 216 80.1
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 4.0e-93 345.5 224 78.6
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.0e-93 345.5 307 62.5
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 5.2e-93 345.1 217 80.2
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.8e-93 344.7 207 83.6
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.8e-93 344.7 207 83.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 6.8e-93 344.7 213 80.8
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.2e-92 344.0 216 79.6
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-92 343.6 266 68.0
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.6e-92 342.8 197 85.3
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 3.4e-92 342.4 217 79.3
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 5.8e-92 341.7 206 83.0
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.8e-92 340.9 206 83.0
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.3e-91 340.5 257 69.6
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.3e-91 340.5 279 65.6
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.9e-91 339.3 264 70.8
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 4.9e-91 338.6 217 78.3
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 1.7e-88 330.1 209 81.3
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 5.6e-87 325.1 284 62.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 3.6e-86 322.4 195 80.0
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 4.7e-86 322.0 210 77.6
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.0e-84 316.6 204 76.5
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.4e-82 308.5 305 58.7
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-80 304.3 224 70.5
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.3e-80 303.9 240 70.4
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 5.1e-80 302.0 204 75.5
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.1e-79 300.8 195 76.4
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.1e-79 300.8 165 88.5
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.6e-78 297.0 192 78.1
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-78 297.0 294 58.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 8.1e-78 294.7 263 63.5
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 2.6e-76 289.7 211 71.1
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.3e-75 287.3 165 86.7
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.3e-75 287.3 154 89.0
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 6.4e-75 285.0 212 67.9
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.1e-74 284.3 229 65.5
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-74 284.3 154 90.9
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 3.2e-74 282.7 209 71.8
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 5.4e-74 282.0 166 80.1
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 9.2e-74 281.2 230 64.3
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.6e-71 271.9 261 60.9
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.6e-70 270.4 149 85.9
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.8e-69 266.9 278 57.2
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 5.2e-69 265.4 191 72.8
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 7.1e-66 255.0 231 59.3
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 9.3e-66 254.6 229 62.4
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 5.1e-64 248.8 213 64.3
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 6.6e-64 248.4 150 82.7
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.5e-63 247.3 158 79.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 2.0e-60 236.9 178 69.7
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 2.3e-56 223.4 227 58.6
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.0e-56 223.0 166 71.1
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 2.1e-54 216.9 132 75.8
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 4.5e-52 209.1 161 69.6
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 4.2e-50 202.6 245 41.6
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 2.8e-46 189.9 323 41.5
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 4.8e-46 189.1 126 74.6
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 4.3e-39 166.0 145 59.3
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 9.3e-34 148.3 188 41.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.8e-32 144.1 84 85.7
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 8.7e-32 141.7 218 39.9
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 8.7e-32 141.7 235 36.6
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 3.3e-23 113.2 62 87.1
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.7e-22 110.9 62 85.5
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.3e-19 101.3 59 86.4
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.5e-18 97.1 123 50.4
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 4.1e-13 79.7 84 50.0
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-12 78.2 140 40.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.1e-10 71.6 40 82.5
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.1e-10 71.6 118 39.8
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.9e-10 70.9 55 69.1
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.2e-10 69.7 36 86.1
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 4.7e-09 66.2 32 96.9
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 8.0e-09 65.5 37 81.1
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.3e-07 60.1 42 66.7
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 7.5e-07 58.9 31 87.1
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.7e-06 57.8 34 76.5


User provided reference genes

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