Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 0.0e+00 1104.4 583 100.0
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.9e-304 1048.5 583 95.5
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 3.1e-206 722.2 584 70.4
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.5e-203 712.6 587 65.8
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 6.5e-188 661.4 580 64.7
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.1e-166 590.9 581 57.7
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 5.1e-140 502.3 593 51.4
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.6e-133 480.7 598 48.3
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 9.6e-131 471.5 556 49.3
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.2e-130 471.1 586 48.6
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.1e-130 470.3 581 49.1
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 3.6e-130 469.5 578 47.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 8.1e-130 468.4 587 46.8
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.5e-128 464.2 543 49.2
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 1.5e-128 464.2 570 48.1
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.5e-128 464.2 566 48.9
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 3.8e-127 459.5 560 47.5
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 4.9e-127 459.1 562 47.7
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.9e-126 457.2 550 49.3
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.1e-125 453.8 552 47.6
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.5e-123 446.8 556 46.9
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.1e-121 441.4 549 47.0
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.0e-121 439.5 578 46.4
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 6.9e-121 438.7 589 45.2
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.0e-120 437.2 572 46.7
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 3.4e-120 436.4 579 46.1
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 4.4e-120 436.0 556 46.9
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 7.6e-120 435.3 563 45.8
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 9.9e-120 434.9 552 44.9
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.8e-119 433.0 548 45.1
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 8.4e-119 431.8 553 44.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 3.2e-118 429.9 571 46.1
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 4.2e-118 429.5 577 44.7
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.6e-117 427.6 586 45.4
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 1.6e-117 427.6 580 45.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.1e-117 427.2 553 48.1
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.7e-117 426.8 584 45.9
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.0e-117 425.6 585 43.4
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 7.9e-117 425.2 641 42.6
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.0e-116 424.9 544 44.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-116 424.9 520 46.2
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-116 424.9 572 45.1
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 3.9e-116 422.9 542 44.1
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 5.1e-116 422.5 557 45.6
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 8.7e-116 421.8 576 45.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.9e-115 420.6 565 45.3
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.3e-115 419.9 548 48.0
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 4.3e-115 419.5 545 46.6
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 5.6e-115 419.1 580 45.0
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.1e-114 417.2 552 44.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 6.2e-114 415.6 581 44.6
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.4e-113 413.7 549 44.1
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.1e-113 413.3 580 44.7
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.3e-113 412.5 541 44.2
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.3e-113 412.5 541 44.2
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.3e-113 412.5 553 44.8
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.2e-112 411.4 564 44.3
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.2e-112 411.4 582 44.8
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 2.6e-112 410.2 544 41.2
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 5.8e-112 409.1 541 46.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 9.9e-112 408.3 578 43.4
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.3e-111 407.9 563 44.4
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.3e-111 407.9 556 44.2
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.7e-111 407.5 578 43.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.7e-111 407.5 541 46.2
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.9e-110 404.1 579 43.0
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.4e-110 403.7 541 41.2
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.2e-109 401.4 578 43.1
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.5e-109 399.8 552 42.6
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 4.6e-109 399.4 548 43.2
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 6.0e-109 399.1 578 42.7
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.0e-108 396.7 586 43.3
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 8.7e-108 395.2 590 42.9
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.1e-107 394.8 585 41.0
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 1.1e-107 394.8 545 40.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 2.5e-107 393.7 546 44.7
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.4e-107 392.1 436 53.2
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.2e-106 389.0 544 42.1
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-105 387.5 586 42.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 9.0e-105 385.2 515 44.7
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 7.6e-104 382.1 552 42.2
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-103 381.7 552 42.6
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.7e-103 380.9 576 41.8
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 8.4e-103 378.6 554 42.6
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-102 377.9 575 41.0
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.9e-102 377.5 579 41.8
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.1e-101 374.0 542 39.3
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.1e-101 374.0 541 39.4
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.1e-101 374.0 553 42.0
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.7e-101 373.6 577 41.4
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.0e-100 370.2 542 39.5
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 5.1e-100 369.4 545 40.2
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.7e-100 369.0 555 41.6
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 8.7e-100 368.6 542 41.9
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.9e-99 367.5 566 42.0
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.9e-99 367.5 470 48.7
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.3e-99 366.7 578 41.5
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.6e-98 364.4 436 49.1
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.1e-98 364.0 578 41.0
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 2.8e-98 363.6 542 39.7
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 3.7e-98 363.2 572 37.9
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 4.8e-98 362.8 578 41.2
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-97 361.7 572 37.9
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 2.4e-97 360.5 592 40.0
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.4e-96 356.7 572 37.6
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.2e-95 354.0 559 41.1
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 3.2e-94 350.1 578 36.5
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 4.2e-94 349.7 546 37.5
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 9.3e-94 348.6 555 37.8
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.6e-93 347.8 569 39.5
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.7e-93 347.1 546 37.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 2.2e-90 337.4 545 40.7
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 5.3e-89 332.8 542 37.5
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.2e-88 331.6 390 48.2
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 3.4e-88 330.1 444 46.6
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 3.2e-86 323.6 545 37.1
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.1e-85 320.9 448 43.8
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.6e-85 319.7 361 51.2
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 3.9e-84 316.6 377 49.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.4e-81 308.1 478 41.8
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 7.2e-78 295.8 566 35.2
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 6.1e-77 292.7 471 43.3
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 9.7e-75 285.4 265 57.7
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 2.2e-74 284.3 439 41.0
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 9.4e-70 268.9 568 33.5
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 3.0e-68 263.8 575 33.4
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 2.7e-64 250.8 266 49.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.0e-60 238.8 391 37.1
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 7.5e-59 232.6 429 37.3
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.1e-57 225.7 333 45.0
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.0e-52 210.7 250 46.0
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 2.9e-47 194.1 372 35.2
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.6e-45 188.3 372 35.2
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.1e-41 175.6 424 30.0
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.9e-38 164.9 250 36.4
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 4.7e-37 160.2 558 26.9
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 8.0e-37 159.5 260 43.1
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.7e-34 151.8 507 25.2
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-31 142.5 225 40.0
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 8.6e-31 139.4 552 26.6
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.3e-30 137.1 147 50.3
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 9.5e-30 136.0 147 50.3
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.1e-28 132.5 503 25.2
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 4.4e-27 127.1 164 36.6
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.8e-27 125.9 186 44.1
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 2.2e-26 124.8 157 43.9
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.9e-23 114.0 126 50.0
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 5.1e-23 113.6 137 43.8
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.1e-23 113.6 164 45.1
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 3.3e-22 110.9 154 41.6
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.7e-21 107.1 147 37.4
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.2e-19 102.4 177 37.9
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.4e-19 100.9 135 43.0
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 5.8e-19 100.1 549 24.8
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 7.6e-19 99.8 566 24.9
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.2e-18 98.2 90 58.9
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.9e-18 97.1 94 50.0
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-16 92.4 111 42.3
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 2.1e-16 91.7 88 60.2
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.5e-16 90.9 116 39.7
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 3.5e-16 90.9 139 36.7
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 4.6e-16 90.5 154 34.4
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.9e-15 87.4 106 47.2
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 1.6e-13 82.0 183 31.7
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 8.1e-13 79.7 113 37.2
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 8.1e-13 79.7 78 57.7
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 1.5e-11 75.5 66 57.6
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.7e-10 72.0 65 53.8
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.9e-10 71.2 124 32.3
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.9e-10 71.2 123 39.8
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.8e-10 70.9 79 41.8
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 9.3e-09 66.2 89 34.8
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-08 65.9 78 52.6
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.8e-08 63.2 69 52.2
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.8e-08 63.2 69 52.2
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.3e-07 62.4 121 39.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.6e-06 56.2 64 48.4


User provided reference genes

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