Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-152 542.3 267 100.0
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.1e-47 192.2 258 43.8
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.9e-46 190.3 260 41.9
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 4.5e-43 179.1 266 39.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.1e-40 170.2 237 40.9
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.6e-40 169.5 265 40.8
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-39 167.2 262 39.3
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 5.1e-39 165.6 252 40.9
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 1.1e-38 164.5 252 39.3
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 9.7e-38 161.4 252 37.7
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.7e-37 159.5 254 37.4
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.8e-37 159.1 251 37.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 6.3e-37 158.7 237 38.0
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 8.2e-37 158.3 252 38.1
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 2.4e-36 156.8 259 37.1
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 3.1e-36 156.4 251 38.6
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 4.1e-36 156.0 274 36.1
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 9.1e-36 154.8 261 37.5
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 9.1e-36 154.8 258 39.1
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.2e-35 154.5 251 37.8
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.2e-35 154.5 258 37.6
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-35 154.5 215 40.5
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.6e-35 153.3 251 36.7
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.6e-35 153.3 251 36.7
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 3.4e-35 152.9 252 36.1
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 5.9e-35 152.1 251 36.3
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 5.9e-35 152.1 252 38.5
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 7.7e-35 151.8 269 37.2
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.0e-34 151.4 252 36.9
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.0e-34 151.4 252 36.9
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.3e-34 151.0 252 36.1
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.7e-34 150.6 254 36.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.9e-34 149.8 252 37.3
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 2.9e-34 149.8 249 38.6
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.9e-34 149.8 252 36.5
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 2.9e-34 149.8 251 36.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 3.8e-34 149.4 257 36.2
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 3.8e-34 149.4 251 37.1
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 5.0e-34 149.1 257 37.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 6.5e-34 148.7 255 35.7
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 8.5e-34 148.3 257 37.4
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 8.5e-34 148.3 252 38.9
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 1.4e-33 147.5 252 36.9
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 1.9e-33 147.1 250 37.2
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.5e-33 146.7 268 34.3
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.2e-33 146.4 251 35.9
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.2e-33 146.0 253 36.4
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 7.2e-33 145.2 254 36.6
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 7.2e-33 145.2 252 35.3
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 9.4e-33 144.8 252 35.7
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.2e-32 144.4 263 34.2
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.2e-32 144.4 251 35.5
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.6e-32 144.1 248 35.9
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.1e-32 143.7 269 34.2
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-32 143.3 224 37.5
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-32 143.3 254 35.0
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.7e-32 143.3 252 35.7
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.6e-32 142.9 252 35.7
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 3.6e-32 142.9 252 35.3
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 3.6e-32 142.9 250 36.4
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 3.6e-32 142.9 263 35.0
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.7e-32 142.5 254 36.2
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.1e-32 142.1 255 36.1
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 7.9e-32 141.7 252 34.5
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 1.0e-31 141.4 252 35.3
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.8e-31 140.6 256 33.6
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.8e-31 140.6 252 33.7
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.3e-31 140.2 255 35.3
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.3e-31 140.2 254 34.3
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 3.0e-31 139.8 254 34.3
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 5.1e-31 139.0 259 34.4
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 8.8e-31 138.3 264 34.8
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 8.8e-31 138.3 249 36.9
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-30 137.9 251 35.1
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.5e-30 137.5 252 34.1
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.0e-30 137.1 213 38.0
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.6e-30 136.7 252 34.9
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.3e-30 136.3 252 34.9
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 3.3e-30 136.3 257 33.1
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 5.7e-30 135.6 252 33.7
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 5.7e-30 135.6 252 34.5
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.4e-30 135.2 252 34.1
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.3e-29 134.4 256 33.2
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.7e-29 134.0 255 32.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.7e-29 134.0 259 33.6
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.2e-29 133.7 253 32.4
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 2.2e-29 133.7 256 32.8
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 2.2e-29 133.7 238 34.5
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.8e-29 133.3 255 32.9
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 2.8e-29 133.3 253 32.4
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 4.8e-29 132.5 255 33.7
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 4.8e-29 132.5 250 33.6
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.3e-29 132.1 252 33.7
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.4e-28 131.0 255 32.9
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.8e-28 130.6 258 32.9
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.4e-28 130.2 254 33.1
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 2.4e-28 130.2 251 32.3
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.4e-28 130.2 264 34.5
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 2.4e-28 130.2 252 33.3
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 3.1e-28 129.8 362 29.3
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 9.1e-28 128.3 256 31.2
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.6e-27 127.5 215 34.9
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 3.5e-27 126.3 257 31.9
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 5.9e-27 125.6 249 34.9
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 2.2e-26 123.6 257 32.7
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 3.8e-26 122.9 278 32.7
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 5.0e-26 122.5 252 33.7
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 6.5e-26 122.1 252 33.3
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.9e-25 120.6 254 32.7
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-25 120.6 282 30.9
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 2.5e-25 120.2 254 32.7
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.2e-25 119.8 284 31.0
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 4.2e-25 119.4 359 28.4
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 7.2e-25 118.6 229 33.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 9.4e-25 118.2 253 30.0
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 2.7e-24 116.7 228 33.8
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.7e-24 116.7 259 30.1
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 4.7e-24 115.9 254 28.7
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 6.1e-24 115.5 258 31.0
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.4e-23 114.4 252 30.2
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 5.2e-23 112.5 251 30.7
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.8e-23 111.7 251 31.5
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 8.8e-23 111.7 265 34.3
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.5e-22 110.9 267 30.3
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 1.5e-22 110.9 262 29.4
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.6e-22 110.2 213 35.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 3.3e-22 109.8 224 32.1
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.3e-21 107.8 229 32.3
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 1.1e-20 104.8 291 29.6
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.4e-20 103.6 263 27.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.6e-19 100.9 264 26.9
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 2.7e-19 100.1 162 37.0
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 2.7e-19 100.1 173 38.2
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 6.5e-18 95.5 235 28.1
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.5e-17 93.6 216 29.6
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.2e-17 92.8 147 36.7
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 4.2e-17 92.8 158 38.6
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 5.5e-17 92.4 210 30.0
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.4e-17 91.7 239 33.9
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.1e-16 90.5 147 36.7
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.0e-15 88.2 160 36.9
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 2.3e-15 87.0 187 32.1
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.2e-14 84.7 219 28.3
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.5e-14 84.3 298 26.8
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 9.8e-14 81.6 253 27.3
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.3e-13 78.6 256 25.8
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.4e-12 77.8 229 26.2
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 7.0e-12 75.5 204 29.4
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 7.0e-12 75.5 204 29.4
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-11 74.7 246 26.0
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.5e-11 73.2 82 43.9
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.5e-11 72.8 82 43.9
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.0e-10 71.6 213 27.2
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.2e-10 70.5 97 38.1
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 3.8e-10 69.7 181 31.5
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 1.9e-09 67.4 232 27.2
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 7.2e-09 65.5 184 28.8
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 1.2e-08 64.7 136 33.8
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 4.4e-06 56.2 72 40.3


User provided reference genes

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