Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62030576 Chenopodium quinoa HOM05D007405 ORTHO05D009256 5.0e-131 472.6 678 100.0
AUR62018305 Chenopodium quinoa HOM05D007405 ORTHO05D009256 8.5e-115 418.7 670 97.0
EL10Ac2g02615 Beta vulgaris HOM05D007405 ORTHO05D009256 9.9e-87 325.5 663 85.2
Ah.10g031180 Amaranthus hybridus HOM05D007405 ORTHO05D009256 6.0e-84 316.2 578 87.4
CsaV3_3G041760 Cucumis sativus L. HOM05D007405 ORTHO05D009256 6.9e-56 223.0 552 81.2
Migut.H00884 Erythranthe guttata HOM05D007405 ORTHO05D009256 1.7e-54 218.4 563 79.6
Cfa007501 Carpinus fangiana HOM05D007405 ORTHO05D009256 2.9e-54 217.6 566 81.1
Sopen02g032330 Solanum pennellii HOM05D007405 ORTHO05D009256 4.2e-53 213.8 528 83.7
Potri.017G075700 Populus trichocarpa HOM05D007405 ORTHO05D009256 1.2e-52 212.2 538 86.8
Sabra17G0067600 Salix brachista HOM05D007405 ORTHO05D009256 7.9e-52 209.5 538 86.4
Haze_14594 Corylus avellana HOM05D007405 ORTHO05D009256 3.9e-51 207.2 560 82.1
Solyc02g087560.1 Solanum lycopersicum HOM05D007405 ORTHO05D009256 8.7e-51 206.1 551 80.4
MD09G1044200 Malus domestica HOM05D007405 ORTHO05D009256 7.4e-50 203.0 529 87.7
Sc11g0006880 Simmondsia chinensis HOM05D007405 ORTHO05D009256 1.3e-49 202.2 526 86.7
MSTRG.19401 Avicennia marina HOM05D007405 ORTHO05D009256 4.8e-49 200.3 637 81.6
Prupe.3G273600 Prunus persica HOM05D007405 ORTHO05D009256 6.2e-49 199.9 530 70.0
MELO3C009896.2 Cucumis melo HOM05D007405 ORTHO05D009256 1.5e-47 195.3 543 81.0
PGSC0003DMG400001306 Solanum tuberosum HOM05D007405 ORTHO05D009256 1.5e-47 195.3 485 87.8
ClCG10G014780 Citrullus lanatus HOM05D007405 ORTHO05D009256 2.0e-47 194.9 533 81.2
CiPaw.04G020600 Carya illinoinensis HOM05D007405 ORTHO05D009256 4.5e-47 193.7 532 84.8
Cc07_g02870 Coffea canephora HOM05D007405 ORTHO05D009256 5.8e-47 193.4 491 85.9
GSVIVG01032591001 Vitis vinifera HOM05D007405 ORTHO05D009256 1.7e-46 191.8 526 88.0
QL02p079911 Quercus lobata HOM05D007405 ORTHO05D009256 3.8e-46 190.7 159 67.9
Nitab4.5_0002265g0130 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.1e-45 189.1 166 60.8
RcHm_v2.0_Chr2g0169431 Rosa chinensis HOM05D007405 ORTHO05D009256 1.1e-45 189.1 520 84.8
Sed0003758 Sechium edule HOM05D007405 ORTHO05D009256 1.4e-45 188.7 154 63.6
TWI56G0828 Tripterygium wilfordii HOM05D007405 ORTHO05D009256 3.2e-45 187.6 153 64.1
Manes.17G025500 Manihot esculenta HOM05D007405 ORTHO05D009256 7.1e-45 186.4 146 64.4
FAN09G1987 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.6e-44 185.3 527 85.8
CSS0008879 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 2.1e-44 184.9 158 60.8
Glyma.18G000700 Glycine max HOM05D007405 ORTHO05D009256 2.7e-44 184.5 576 75.7
PGR031G2628 Punica granatum HOM05D007405 ORTHO05D009256 2.7e-44 184.5 116 75.0
CAN.G206.101 Capsicum annuum HOM05D007405 ORTHO05D009256 3.5e-44 184.1 146 65.1
FAN02G3519 Fragaria x ananassa HOM05D007405 ORTHO05D009256 3.5e-44 184.1 558 82.3
HanXRQChr14g0449381 Helianthus annuus HOM05D007405 ORTHO05D009256 3.5e-44 184.1 179 56.4
Lsat_1_v5_gn_2_90480 Lactuca sativa HOM05D007405 ORTHO05D009256 3.5e-44 184.1 530 84.9
CANSAT64G0564 Cannabis sativa HOM05D007405 ORTHO05D009256 4.6e-44 183.7 528 83.7
Dinv33696 Davidia involucrata HOM05D007405 ORTHO05D009256 7.9e-44 183.0 525 68.4
Duzib147G0736 Durio zibethinus HOM05D007405 ORTHO05D009256 7.9e-44 183.0 157 62.4
FvH4_6g49520 Fragaria vesca HOM05D007405 ORTHO05D009256 1.0e-43 182.6 525 85.7
FAN14G0904 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.0e-43 182.6 525 85.9
FAN14G4765 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.0e-43 182.6 525 85.9
Oeu027767.1 Olea europaea HOM05D007405 ORTHO05D009256 1.0e-43 182.6 526 81.9
CSS0011088 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 3.0e-43 181.0 106 79.2
Lj6g0001930 Lotus japonicus HOM05D007405 ORTHO05D009256 3.0e-43 181.0 154 62.3
PSO832G3067 Papaver somniferum HOM05D007405 ORTHO05D009256 5.1e-43 180.3 501 89.6
Atru.chr8.2441 Acer truncatum HOM05D007405 ORTHO05D009256 6.7e-43 179.9 156 61.5
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 6.7e-43 179.9 655 72.8
A07p20170 Brassica napus HOM05D007405 ORTHO05D009256 1.9e-42 178.3 158 60.8
Ciclev10011224m.g Citrus clementina HOM05D007405 ORTHO05D009256 2.5e-42 177.9 153 61.4
FAN05G4748 Fragaria x ananassa HOM05D007405 ORTHO05D009256 2.5e-42 177.9 527 74.4
VMungo1383G1541 Vigna mungo HOM05D007405 ORTHO05D009256 2.5e-42 177.9 526 79.7
BraA07t29716Z Brassica rapa HOM05D007405 ORTHO05D009256 3.3e-42 177.6 158 60.8
Lalb_Chr23g0278451 Lupinus albus HOM05D007405 ORTHO05D009256 3.3e-42 177.6 151 61.6
AT5G39980 Arabidopsis thaliana HOM05D007405 ORTHO05D009256 4.3e-42 177.2 538 84.2
DCAR_011169 Daucus carota HOM05D007405 ORTHO05D009256 4.3e-42 177.2 159 62.3
Gohir.D07G222200 Gossypium hirsutum HOM05D007405 ORTHO05D009256 4.3e-42 177.2 145 63.4
Gorai.001G256500 Gossypium raimondii HOM05D007405 ORTHO05D009256 4.3e-42 177.2 145 63.4
Thhalv10028245m.g Eutrema salsugineum HOM05D007405 ORTHO05D009256 5.7e-42 176.8 115 73.9
Gohir.A07G215301 Gossypium hirsutum HOM05D007405 ORTHO05D009256 7.4e-42 176.4 145 63.4
Glyma.11G256300 Glycine max HOM05D007405 ORTHO05D009256 1.3e-41 175.6 572 74.7
Sp7g02090 Schrenkiella parvula HOM05D007405 ORTHO05D009256 1.6e-41 175.3 146 63.0
AL7G50110 Arabidopsis lyrata HOM05D007405 ORTHO05D009256 2.2e-41 174.9 152 60.5
BcaC08g44440 Brassica carinata HOM05D007405 ORTHO05D009256 2.2e-41 174.9 149 63.8
C06p18840 Brassica napus HOM05D007405 ORTHO05D009256 2.2e-41 174.9 149 63.8
BolC6t37089H Brassica oleracea HOM05D007405 ORTHO05D009256 2.2e-41 174.9 149 63.8
CARHR262150 Cardamine hirsuta HOM05D007405 ORTHO05D009256 2.8e-41 174.5 146 63.7
Thecc.04G073000 Theobroma cacao HOM05D007405 ORTHO05D009256 2.8e-41 174.5 154 58.4
TAR039G0001 Trochodendron aralioides HOM05D002295 ORTHO05D002789 2.8e-41 174.5 154 64.3
FAN02G3321 Fragaria x ananassa HOM05D007405 ORTHO05D009256 3.1e-40 171.0 176 53.4
BcaB02g07958 Brassica carinata HOM05D007405 ORTHO05D009256 4.1e-40 170.6 115 73.0
THA.LOC104823926 Tarenaya hassleriana HOM05D007405 ORTHO05D009256 4.1e-40 170.6 151 60.9
PSO591G0419 Papaver somniferum HOM05D007405 ORTHO05D009256 5.3e-40 170.2 548 83.0
Carub.0007s3571 Capsella rubella HOM05D007405 ORTHO05D009256 9.0e-40 169.5 114 71.1
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 2.6e-39 167.9 104 76.9
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 3.4e-39 167.5 113 71.7
Nn1g09226 Nelumbo nucifera HOM05D007405 ORTHO05D009256 3.4e-39 167.5 158 59.5
Cpa.g.sc14.54 Carica papaya HOM05D007405 ORTHO05D009256 7.6e-39 166.4 99 79.8
SGA_v2.0_scaffold115G32153 Striga asiatica HOM05D007405 ORTHO05D009256 1.7e-38 165.2 144 60.4
TPR.G22753 Trifolium pratense HOM05D007405 ORTHO05D009256 2.9e-38 164.5 154 55.8
Lj7A402T45 Lonicera japonica HOM05D007405 ORTHO05D009256 3.8e-38 164.1 533 73.7
Psat5g105040 Pisum sativum HOM05D007405 ORTHO05D009256 3.2e-37 161.0 154 55.2
Rhsim10G0030900 Rhododendron simsii HOM05D007405 ORTHO05D009256 7.2e-37 159.8 491 87.0
Ca_16386_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 7.9e-36 156.4 164 51.2
Ca_29700_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 7.9e-36 156.4 164 51.2
Medtr3g083680 Medicago truncatula HOM05D007405 ORTHO05D009256 1.3e-35 155.6 149 53.0
CDE06G2170 Ceratophyllum demersum HOM05D007405 ORTHO05D009256 5.0e-30 137.1 89 71.9
MBI08_g09795_MAGBIO Magnolia biondii HOM05D007405 ORTHO05D009256 1.0e-27 129.4 76 76.3
Peaxi162Scf00129g00512 Petunia axillaris HOM05D007405 ORTHO05D009256 8.8e-27 126.3 442 86.4
ATR1127G129 Amborella trichopoda HOM05D007405 ORTHO05D009256 1.5e-26 125.6 113 55.8
Phvul.001G268500 Phaseolus vulgaris HOM05D007405 ORTHO05D009256 2.0e-26 125.2 70 84.3
Nitab4.5_0000564g0400 Nicotiana tabacum HOM05D007405 ORTHO05D009256 4.1e-24 117.5 64 84.4
SEGI_22031 Sequoiadendron giganteum HOM05D007405 ORTHO05D009256 2.2e-22 111.7 88 59.1
Pp3c3_5760 Physcomitrium patens HOM05D007405 ORTHO05D009256 3.2e-21 107.8 102 47.1
Pp3c3_5764 Physcomitrium patens HOM05D007405 ORTHO05D009256 3.2e-21 107.8 102 47.1
HPP92_019727 Vanilla planifolia HOM05D007405 ORTHO05D009256 2.6e-18 98.2 155 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2241 Anthoceros agrestis HOM05D007405 ORTHO05D009256 4.4e-18 97.4 100 47.0
Mapoly0061s0076 Marchantia polymorpha HOM05D007405 ORTHO05D009256 3.7e-17 94.4 100 44.0
Zm00001eb148940 Zea mays HOM05D007405 ORTHO05D009256 1.8e-16 92.0 71 56.3
Eucgr.J02141 Eucalyptus grandis HOM05D007405 ORTHO05D009256 3.5e-15 87.8 53 77.4
Os01g0833000 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 1.0e-14 86.3 69 52.2
SMO367G0452 Selaginella moellendorffii HOM05D007405 ORTHO05D009256 4.7e-12 77.4 59 55.9
FAN02G2814 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.5e-10 72.4 38 84.2
Actinidia06062 Actinidia chinensis HOM05D007405 ORTHO05D009256 1.7e-09 68.9 72 55.6
FAN02G2590 Fragaria x ananassa HOM05D007405 ORTHO05D009256 4.1e-08 64.3 41 75.6
Actinidia06059 Actinidia chinensis HOM05D007405 ORTHO05D009256 1.2e-07 62.8 53 64.2
CANSAT78G2316 Cannabis sativa HOM05D002479 ORTHO05D002675 8.5e-06 56.6 82 29.3


User provided reference genes

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