Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 0.0e+00 1171.8 569 100.0
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 0.0e+00 1130.5 569 96.0
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 2.3e-302 1041.6 569 87.2
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.6e-279 964.1 563 81.3
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 7.8e-279 963.4 563 81.2
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.0e-278 963.0 563 81.3
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.0e-278 963.0 569 80.5
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-278 962.2 563 81.2
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-277 959.1 558 81.5
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.5e-277 958.4 570 79.8
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 1.4e-275 952.6 550 82.4
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.8e-275 952.2 566 79.7
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 2.4e-275 951.8 565 80.4
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 3.1e-275 951.4 561 79.9
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 5.2e-275 950.7 543 82.1
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 6.9e-275 950.3 566 79.5
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 6.9e-275 950.3 542 83.2
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.5e-274 949.1 543 81.8
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 2.6e-274 948.3 550 81.8
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 4.4e-274 947.6 561 80.2
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 5.8e-274 947.2 542 82.1
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 7.6e-274 946.8 543 82.0
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 7.6e-274 946.8 542 82.1
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 7.6e-274 946.8 560 79.5
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 9.9e-274 946.4 571 78.5
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.3e-273 946.0 542 83.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.3e-273 946.0 561 79.1
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 3.8e-273 944.5 542 81.4
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 3.8e-273 944.5 569 79.6
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 3.8e-273 944.5 542 81.7
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 4.9e-273 944.1 542 81.5
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 8.4e-273 943.3 560 79.1
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 2.4e-272 941.8 593 76.9
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.2e-272 941.4 550 81.6
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 4.2e-272 941.0 542 81.4
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 4.2e-272 941.0 560 80.2
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 4.2e-272 941.0 560 79.3
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 5.4e-272 940.6 554 80.1
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 7.1e-272 940.3 550 81.8
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.6e-271 939.1 570 78.6
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.6e-271 939.1 568 78.5
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.0e-271 937.2 561 79.3
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 6.0e-271 937.2 566 78.6
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 6.0e-271 937.2 561 78.3
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 6.0e-271 937.2 569 78.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 7.8e-271 936.8 564 79.1
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 7.8e-271 936.8 563 78.9
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.0e-270 936.4 542 81.2
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.0e-270 936.4 562 77.6
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.7e-270 935.6 562 79.7
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.7e-270 935.6 564 79.1
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.3e-270 935.3 542 81.2
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 3.0e-270 934.9 542 81.2
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 5.1e-270 934.1 550 80.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 8.7e-270 933.3 547 80.6
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.1e-269 932.9 569 77.9
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.5e-269 932.6 561 78.8
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.5e-269 932.6 545 80.4
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.5e-269 932.6 542 81.5
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.9e-269 932.2 564 78.4
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 3.3e-269 931.4 542 81.4
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 5.6e-269 930.6 543 79.9
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 5.6e-269 930.6 561 78.8
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.3e-268 929.5 542 81.5
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.6e-268 929.1 546 80.4
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.1e-268 928.7 550 79.5
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.1e-268 928.7 546 80.4
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 2.1e-268 928.7 575 77.9
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.8e-267 925.6 560 79.1
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 2.4e-267 925.2 560 78.4
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 3.1e-267 924.9 551 79.1
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 5.3e-267 924.1 564 79.6
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 9.0e-267 923.3 566 78.4
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.5e-266 922.5 598 74.6
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.6e-266 921.8 565 77.7
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.4e-266 921.4 557 78.6
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 9.9e-266 919.8 565 77.5
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 9.9e-266 919.8 573 77.5
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.3e-265 919.5 550 79.3
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.7e-265 919.1 570 78.6
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 8.4e-265 916.8 546 79.5
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.4e-264 915.2 546 79.3
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 5.4e-264 914.1 547 79.3
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 2.1e-263 912.1 546 78.9
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 5.1e-262 907.5 562 77.0
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.1e-261 906.4 564 76.8
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.1e-261 906.4 542 79.5
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 4.8e-260 901.0 550 78.2
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.8e-259 899.0 550 78.0
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.5e-258 896.0 542 77.7
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.1e-256 889.8 543 77.7
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.9e-256 889.0 521 81.6
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 2.7e-255 885.2 499 84.0
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 1.4e-248 862.8 563 73.4
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.7e-247 858.6 546 74.2
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.1e-245 853.2 494 81.4
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.9e-245 852.4 543 74.6
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.4e-245 850.5 539 74.8
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-244 849.7 539 74.6
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 3.7e-244 848.2 566 73.3
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.0e-242 842.4 562 72.2
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 7.6e-242 840.5 562 72.1
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 5.0e-241 837.8 565 72.7
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.0e-238 828.6 546 71.4
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 6.7e-238 827.4 569 70.1
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 1.6e-236 822.8 552 71.6
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.2e-231 806.6 545 69.9
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 2.0e-226 789.3 551 70.8
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.9e-225 785.4 506 74.3
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.8e-222 776.2 550 67.1
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 8.8e-222 773.9 557 68.4
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 2.4e-219 765.8 538 67.1
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 3.5e-218 761.9 456 80.7
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 8.5e-217 757.3 536 65.9
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.7e-212 741.9 557 66.6
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 5.9e-210 734.6 536 65.5
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.6e-207 726.5 542 64.0
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 2.7e-207 725.7 425 81.4
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 2.7e-207 725.7 421 81.7
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-200 703.7 536 62.5
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.2e-200 701.8 541 64.3
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.2e-200 701.8 541 64.3
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 2.0e-186 656.4 609 58.0
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.3e-151 540.8 323 78.6
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 3.6e-151 539.3 331 76.7
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 3.1e-150 536.2 565 53.3
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 2.1e-143 513.5 546 49.6
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-132 477.2 286 77.6
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 4.6e-130 469.2 306 72.2
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.5e-128 464.2 323 69.3
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 4.8e-127 459.1 351 66.4
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 4.7e-98 362.8 199 84.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.1e-86 322.0 505 41.6
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 1.7e-71 274.6 192 68.2
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.1e-66 257.7 338 42.9
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.9e-51 208.0 126 78.6
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 9.5e-51 205.7 139 70.5
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-50 205.3 131 77.1
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 7.6e-48 196.1 124 73.4
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.7e-47 194.9 109 78.9
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 4.9e-47 193.4 132 68.2
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.1e-46 192.2 131 68.7
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.3e-44 184.5 122 69.7
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.3e-44 184.5 122 69.7
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-43 180.6 119 69.7
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-41 175.3 115 69.6
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.4e-41 175.3 115 69.6
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.3e-39 168.7 95 80.0
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.7e-39 168.3 114 67.5
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.7e-39 168.3 114 67.5
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.7e-36 158.3 76 90.8
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 6.2e-26 123.2 121 55.4
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.4e-24 117.5 86 67.4
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 5.8e-24 116.7 79 69.6
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 1.4e-22 112.1 118 48.3
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 4.6e-21 107.1 189 39.2
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.7e-15 88.6 60 68.3
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.8e-12 78.6 64 64.1


User provided reference genes

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