Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.2e-308 1062.4 549 100.0
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.5e-282 974.9 549 90.7
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.6e-263 911.8 549 85.2
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 2.2e-217 759.2 557 70.6
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 3.7e-161 572.4 583 56.8
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.1e-149 534.3 589 51.8
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 2.2e-145 520.0 528 55.9
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 3.0e-142 509.6 590 49.7
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.3e-134 483.4 588 48.5
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.1e-133 481.1 579 49.4
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 9.6e-133 478.0 605 48.1
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 1.3e-132 477.6 582 47.9
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 4.8e-132 475.7 575 48.9
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 2.4e-131 473.4 580 48.1
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 1.0e-129 468.0 580 47.9
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.4e-128 464.2 571 48.7
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 2.5e-128 463.4 569 47.3
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.6e-127 460.7 569 48.2
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.6e-127 460.7 598 45.3
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 6.0e-127 458.8 591 47.0
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.8e-126 457.2 569 48.0
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 3.0e-126 456.4 604 46.9
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.5e-125 453.4 595 47.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.5e-125 453.4 570 46.3
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 7.4e-125 451.8 587 45.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.6e-125 451.4 571 48.0
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 4.8e-124 449.1 567 47.1
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 4.0e-123 446.0 587 45.5
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 6.9e-123 445.3 567 47.1
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 6.9e-123 445.3 584 48.1
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 6.9e-123 445.3 647 43.9
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 9.0e-123 444.9 568 45.8
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 1.2e-122 444.5 584 46.9
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.2e-122 444.5 568 46.3
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.5e-122 444.1 573 46.4
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.5e-122 444.1 573 46.4
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 6.5e-121 438.7 588 46.1
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 3.2e-120 436.4 545 47.9
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 3.2e-120 436.4 574 44.8
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 9.3e-120 434.9 626 42.0
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.5e-119 433.0 580 45.0
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 7.9e-119 431.8 552 47.6
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 7.9e-119 431.8 591 47.5
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.0e-118 431.4 577 45.6
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.0e-118 431.4 580 44.8
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.3e-118 431.0 580 44.8
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.0e-118 429.9 608 45.4
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.1e-118 429.1 579 45.1
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.6e-116 424.1 592 45.4
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.8e-116 423.3 610 43.0
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 6.3e-116 422.2 736 40.5
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 2.4e-115 420.2 525 48.8
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 2.4e-115 420.2 640 40.8
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.4e-114 416.4 577 45.6
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 5.9e-114 415.6 659 40.7
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.0e-113 414.8 675 40.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.9e-112 410.6 564 45.2
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.2e-111 407.9 552 44.9
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.2e-111 407.9 590 42.9
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.6e-111 406.4 580 43.8
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.6e-111 406.0 568 44.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 6.1e-111 405.6 571 45.4
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.0e-110 404.8 594 42.9
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 5.1e-110 402.5 552 43.8
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 8.8e-110 401.7 553 44.7
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.5e-109 400.2 732 37.8
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.5e-109 400.2 649 40.8
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 3.3e-109 399.8 553 42.3
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 4.3e-109 399.4 641 38.8
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 7.4e-109 398.7 600 41.2
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.3e-108 397.9 552 43.3
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 1.3e-108 397.9 605 42.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.3e-108 397.9 560 42.7
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 3.7e-108 396.4 709 38.4
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 4.8e-108 396.0 559 42.2
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.1e-107 394.8 638 41.4
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 2.4e-107 393.7 668 38.9
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.5e-106 391.0 590 41.2
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 2.0e-106 390.6 556 42.6
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 7.7e-106 388.7 652 39.9
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 3.8e-105 386.3 591 41.1
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.9e-104 384.0 587 41.6
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.2e-104 383.3 554 41.9
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 5.5e-104 382.5 584 42.3
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 4.7e-103 379.4 695 38.4
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.8e-102 377.5 554 41.7
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 3.9e-102 376.3 710 36.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 2.6e-101 373.6 858 34.4
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.1e-99 368.2 629 38.6
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 3.1e-99 366.7 572 42.0
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 2.0e-98 364.0 629 38.2
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 5.9e-98 362.5 673 38.6
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 4.7e-95 352.8 555 40.2
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 4.1e-91 339.7 565 39.3
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.7e-89 334.3 270 62.6
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 5.5e-88 329.3 462 46.5
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 7.2e-88 328.9 455 46.2
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 2.2e-84 317.4 744 32.7
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.2e-82 311.6 466 43.3
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.9e-80 304.3 467 44.8
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.7e-79 300.4 226 64.6
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 2.0e-74 284.3 229 59.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.0e-73 279.6 199 68.8
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 9.8e-69 265.4 528 37.5
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 2.4e-67 260.8 230 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.3e-65 255.0 577 34.3
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.4e-62 245.0 684 28.5
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.9e-60 236.5 484 33.5
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.6e-58 231.5 484 32.9
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 3.1e-54 217.2 197 56.9
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.0e-53 214.5 483 31.9
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.6e-45 187.6 178 51.1
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.2e-44 184.5 202 52.0
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 8.4e-44 182.6 192 52.6
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 6.0e-42 176.4 170 54.7
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 7.3e-40 169.5 193 46.1
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 3.1e-30 137.5 194 41.8
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.3e-30 136.7 139 56.1
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.0e-29 134.8 242 36.0
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 2.6e-29 134.4 250 39.2
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-27 128.6 191 40.8
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 1.3e-23 115.5 196 38.8
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 1.3e-23 115.5 196 38.8
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 2.8e-23 114.4 347 29.7
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 2.0e-21 108.2 156 39.1
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.1e-19 102.4 142 40.8
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 7.1e-19 99.8 157 42.0
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.1e-17 93.6 68 64.7
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 3.7e-15 87.4 158 38.6
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 6.5e-12 76.6 107 43.9
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.4e-11 75.5 60 58.3
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.6e-10 70.5 100 43.0
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 6.0e-10 70.1 135 35.6
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.0e-09 69.3 77 42.9
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 3.0e-09 67.8 48 68.8
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 3.0e-09 67.8 135 34.1
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.0e-09 67.8 122 36.9
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 3.9e-09 67.4 120 38.3
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 6.7e-09 66.6 219 27.9
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 8.7e-09 66.2 138 34.1
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.1e-08 65.9 122 33.6
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.9e-08 65.1 122 37.7
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.9e-08 65.1 73 46.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 2.5e-08 64.7 134 35.1
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.3e-08 64.3 118 34.7
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.3e-08 64.3 49 63.3
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.3e-08 64.3 174 31.6
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.3e-08 63.9 133 33.8
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.3e-08 63.9 133 33.1
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 4.3e-08 63.9 123 36.6
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 7.4e-08 63.2 133 32.3
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 7.4e-08 63.2 134 35.1
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 7.4e-08 63.2 104 37.5
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 7.4e-08 63.2 104 37.5
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.3e-07 62.4 124 38.7
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.1e-07 61.6 122 33.6
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-07 61.6 76 43.4
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 2.8e-07 61.2 123 37.4
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 3.7e-07 60.8 122 34.4
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 4.8e-07 60.5 221 29.4
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 8.2e-07 59.7 120 36.7
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.4e-06 58.9 119 32.8
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-06 58.9 56 55.4
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.8e-06 58.5 122 35.2
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.4e-06 58.2 317 25.2
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 4.1e-06 57.4 109 39.4
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 5.3e-06 57.0 122 33.6
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 5.3e-06 57.0 61 47.5
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 6.9e-06 56.6 122 30.3
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 9.0e-06 56.2 238 28.6


User provided reference genes

Program Settings