Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 5.6e-89 330.9 161 100.0
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 6.2e-72 274.2 144 93.8
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.4e-70 268.1 142 93.0
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 7.1e-68 260.8 142 90.8
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 2.1e-48 196.1 144 69.4
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 3.1e-47 192.2 150 68.0
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 9.0e-47 190.7 158 62.7
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.6e-46 189.1 157 62.4
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 4.5e-46 188.3 157 63.1
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 5.8e-46 188.0 155 65.2
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 9.9e-46 187.2 167 60.5
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 4.9e-45 184.9 154 63.0
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 6.4e-45 184.5 154 62.3
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.9e-44 183.0 155 60.6
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 4.2e-44 181.8 155 60.0
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 4.2e-44 181.8 155 60.0
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 5.5e-44 181.4 147 61.2
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 5.5e-44 181.4 153 60.1
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 5.5e-44 181.4 156 62.2
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 7.1e-44 181.0 155 61.3
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 1.2e-43 180.3 159 61.0
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.6e-43 179.9 156 61.5
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 2.1e-43 179.5 149 62.4
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 2.1e-43 179.5 155 63.2
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 2.7e-43 179.1 150 62.0
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 2.7e-43 179.1 147 62.6
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 6.0e-43 177.9 147 61.9
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 6.0e-43 177.9 146 64.4
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 1.0e-42 177.2 155 61.3
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 1.0e-42 177.2 157 62.4
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.3e-42 176.8 154 60.4
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.3e-42 176.8 147 61.9
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 1.3e-42 176.8 159 58.5
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 1.8e-42 176.4 155 58.7
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 3.0e-42 175.6 156 56.4
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 5.1e-42 174.9 154 59.7
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 5.1e-42 174.9 154 59.7
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 6.7e-42 174.5 154 59.7
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 6.7e-42 174.5 155 58.7
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 6.7e-42 174.5 150 60.0
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 6.7e-42 174.5 161 57.8
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 8.7e-42 174.1 155 58.7
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 8.7e-42 174.1 156 57.7
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 8.7e-42 174.1 154 59.7
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 8.7e-42 174.1 154 59.1
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 8.7e-42 174.1 154 59.1
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 1.1e-41 173.7 155 58.1
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 1.1e-41 173.7 156 57.1
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 1.1e-41 173.7 154 58.4
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 1.1e-41 173.7 158 60.8
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 1.5e-41 173.3 155 58.7
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.5e-41 172.6 157 58.6
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.5e-41 172.6 157 58.6
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 2.5e-41 172.6 152 58.6
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 3.3e-41 172.2 155 57.4
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 3.3e-41 172.2 159 58.5
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 3.3e-41 172.2 158 57.6
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 7.4e-41 171.0 159 57.2
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 9.6e-41 170.6 165 58.2
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 9.6e-41 170.6 156 61.5
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 9.6e-41 170.6 158 57.0
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 9.6e-41 170.6 156 57.1
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 1.3e-40 170.2 150 58.7
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 2.1e-40 169.5 162 54.9
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 2.1e-40 169.5 162 54.9
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 2.8e-40 169.1 155 56.8
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 2.8e-40 169.1 157 56.1
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 2.8e-40 169.1 156 55.1
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 3.7e-40 168.7 155 56.8
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 4.8e-40 168.3 154 57.1
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 6.2e-40 167.9 153 56.2
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 6.2e-40 167.9 156 56.4
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 1.1e-39 167.2 158 57.0
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 1.4e-39 166.8 151 58.3
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 1.4e-39 166.8 149 57.7
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 1.4e-39 166.8 146 59.6
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 4.0e-39 165.2 158 57.0
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 9.0e-39 164.1 149 56.4
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 9.0e-39 164.1 149 56.4
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 9.0e-39 164.1 153 58.8
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 1.2e-38 163.7 151 57.6
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.2e-38 163.7 156 55.1
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 3.4e-38 162.2 162 53.1
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 5.8e-38 161.4 141 61.7
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 5.8e-38 161.4 162 53.1
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 7.6e-38 161.0 162 53.7
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 1.7e-37 159.8 145 57.9
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.2e-37 159.5 162 53.7
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 1.4e-36 156.8 191 45.5
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 4.2e-36 155.2 158 51.3
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.2e-36 155.2 152 54.6
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 9.3e-36 154.1 149 55.0
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 2.7e-35 152.5 164 51.2
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 3.5e-35 152.1 160 50.0
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 1.8e-34 149.8 153 53.6
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 5.1e-34 148.3 153 52.9
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 6.7e-34 147.9 141 54.6
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 1.5e-33 146.7 153 52.3
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 7.4e-33 144.4 159 50.9
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 8.2e-32 141.0 166 46.4
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 3.4e-30 135.6 158 46.8
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 3.6e-27 125.6 120 57.5
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 4.6e-27 125.2 142 48.6
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 6.1e-27 124.8 142 48.6
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 7.9e-27 124.4 66 89.4
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 7.9e-27 124.4 128 50.0
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 1.0e-26 124.0 161 41.6
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 5.1e-26 121.7 154 48.1
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 5.7e-25 118.2 156 44.9
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.4e-20 103.6 157 36.9
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.4e-20 103.6 119 42.9
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 3.2e-20 102.4 96 60.4
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 5.7e-17 91.7 51 86.3
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 6.5e-13 78.2 86 50.0
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 1.4e-10 70.5 41 82.9
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 2.8e-08 62.8 83 43.4
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 1.6e-06 57.0 54 46.3
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 1.6e-06 57.0 91 39.6
AUR62018418 Chenopodium quinoa HOM05D000009 ORTHO05D006588 4.5e-06 55.5 28 89.3


User provided reference genes

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