Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028804 Chenopodium quinoa HOM05D001598 ORTHO05D002757 2.1e-91 339.0 169 100.0
AUR62005754 Chenopodium quinoa HOM05D001598 ORTHO05D002757 3.7e-59 231.9 168 73.2
Ah.02g131210 Amaranthus hybridus HOM05D001645 ORTHO05D002757 1.9e-55 219.5 175 66.3
EL10Ac6g13181 Beta vulgaris HOM05D001598 ORTHO05D002757 1.5e-52 209.9 141 71.6
Hund25254 Selenicereus undatus HOM05D001598 ORTHO05D002757 6.1e-46 188.0 178 58.4
ECA234G4840 Erigeron canadensis HOM05D001598 ORTHO05D002757 3.1e-42 175.6 148 60.8
Nitab4.5_0003566g0010 Nicotiana tabacum HOM05D001598 ORTHO05D002757 7.0e-42 174.5 163 58.9
COL.COLO4_22982 Corchorus olitorius HOM05D001598 ORTHO05D010176 1.2e-41 173.7 176 58.0
Nitab4.5_0000141g0270 Nicotiana tabacum HOM05D001598 ORTHO05D002757 2.7e-41 172.6 163 59.5
Atru.chr11.1822 Acer truncatum HOM05D001598 ORTHO05D002757 1.3e-40 170.2 180 54.4
Prupe.1G272100 Prunus persica HOM05D001598 ORTHO05D002757 3.8e-40 168.7 184 51.6
AL5G12440 Arabidopsis lyrata HOM05D001598 ORTHO05D002757 5.0e-40 168.3 153 59.5
FvH4_4g31560 Fragaria vesca HOM05D001598 ORTHO05D002757 1.5e-39 166.8 187 52.9
MD13G1073900 Malus domestica HOM05D001598 ORTHO05D002757 1.5e-39 166.8 141 60.3
AT2G02880 Arabidopsis thaliana HOM05D001598 ORTHO05D002757 1.9e-39 166.4 177 55.4
TAR629G1744 Trochodendron aralioides HOM05D001598 ORTHO05D002757 1.9e-39 166.4 188 52.7
MD16G1075100 Malus domestica HOM05D001598 ORTHO05D002757 2.5e-39 166.0 188 51.1
Prupe.3G107100 Prunus persica HOM05D001598 ORTHO05D002757 5.5e-39 164.9 184 52.2
Thecc.02G349900 Theobroma cacao HOM05D001598 ORTHO05D002757 5.5e-39 164.9 144 62.5
HanXRQChr12g0371061 Helianthus annuus HOM05D001598 ORTHO05D002757 7.2e-39 164.5 148 59.5
Lalb_Chr10g0098161 Lupinus albus HOM05D001598 ORTHO05D002757 9.5e-39 164.1 155 58.1
Duzib251G0726 Durio zibethinus HOM05D001598 ORTHO05D002757 1.2e-38 163.7 142 63.4
Glyma.01G045300 Glycine max HOM05D001598 ORTHO05D002757 1.2e-38 163.7 176 56.2
CAN.G38.31 Capsicum annuum HOM05D001598 ORTHO05D002757 1.6e-38 163.3 182 53.3
Gorai.003G147700 Gossypium raimondii HOM05D001598 ORTHO05D002757 1.6e-38 163.3 141 63.8
FAN12G4270 Fragaria x ananassa HOM05D001598 ORTHO05D002757 2.1e-38 162.9 194 51.0
Thhalv10004617m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 2.8e-38 162.5 152 59.2
Lj2g0010789 Lotus japonicus HOM05D001598 ORTHO05D002757 2.8e-38 162.5 142 60.6
Aa31LG2G7420 Aethionema arabicum HOM05D001598 ORTHO05D002757 3.6e-38 162.2 153 57.5
Gohir.A03G104500 Gossypium hirsutum HOM05D001598 ORTHO05D002757 3.6e-38 162.2 141 63.1
Gohir.D03G140900 Gossypium hirsutum HOM05D001598 ORTHO05D002757 3.6e-38 162.2 141 63.1
Gohir.D02G129600 Gossypium hirsutum HOM05D001598 ORTHO05D002757 4.7e-38 161.8 141 63.1
Gorai.005G145600 Gossypium raimondii HOM05D001598 ORTHO05D002757 4.7e-38 161.8 141 63.1
arahy.Tifrunner.gnm1.ann1.BUM29L Arachis hypogaea HOM05D001598 ORTHO05D002757 6.1e-38 161.4 163 54.0
Gohir.D03G140800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 6.1e-38 161.4 140 63.6
Medtr5g039440 Medicago truncatula HOM05D001598 ORTHO05D002757 6.1e-38 161.4 173 54.3
vmacro01241 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 6.1e-38 161.4 180 53.3
vmacro01243 Vaccinium macrocarpon HOM05D001645 ORTHO05D002757 6.1e-38 161.4 180 53.3
TAR629G0383 Trochodendron aralioides HOM05D001598 ORTHO05D002757 1.0e-37 160.6 141 61.7
BcaB07g30318 Brassica carinata HOM05D001598 ORTHO05D002757 1.4e-37 160.2 169 55.6
Carub.0005s0177 Capsella rubella HOM05D001598 ORTHO05D002757 1.4e-37 160.2 175 55.4
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.8e-37 159.8 145 61.4
Solyc01g010570.4 Solanum lycopersicum HOM05D001598 ORTHO05D002757 1.8e-37 159.8 163 58.3
Sopen01g006220 Solanum pennellii HOM05D001598 ORTHO05D002757 1.8e-37 159.8 163 58.3
TPR.G37035 Trifolium pratense HOM05D001598 ORTHO05D002757 1.8e-37 159.8 146 58.9
PGR119G0480 Punica granatum HOM05D001598 ORTHO05D002757 2.3e-37 159.5 185 50.8
arahy.Tifrunner.gnm1.ann1.5WK4WG Arachis hypogaea HOM05D001598 ORTHO05D002757 3.0e-37 159.1 161 54.0
arahy.Tifrunner.gnm1.ann1.Z4M8GV Arachis hypogaea HOM05D001598 ORTHO05D002757 3.0e-37 159.1 161 54.0
Sp2g13960 Schrenkiella parvula HOM05D001598 ORTHO05D002757 3.0e-37 159.1 177 52.5
Manes.06G018600 Manihot esculenta HOM05D001598 ORTHO05D002757 4.0e-37 158.7 187 52.9
Cc11_g13210 Coffea canephora HOM05D001598 ORTHO05D002757 5.2e-37 158.3 186 53.2
Migut.L01310 Erythranthe guttata HOM05D001598 ORTHO05D002757 5.2e-37 158.3 156 55.1
Nn4g23114 Nelumbo nucifera HOM05D001598 ORTHO05D002757 5.2e-37 158.3 189 49.2
QL03p064604 Quercus lobata HOM05D001598 ORTHO05D002757 5.2e-37 158.3 157 56.1
Lsat_1_v5_gn_8_4521 Lactuca sativa HOM05D001598 ORTHO05D002757 6.8e-37 157.9 173 50.9
Sed0011075 Sechium edule HOM05D001598 ORTHO05D002757 8.9e-37 157.5 183 51.4
ClCG03G014280 Citrullus lanatus HOM05D001598 ORTHO05D002757 1.2e-36 157.1 206 47.6
Haze_12029 Corylus avellana HOM05D001598 ORTHO05D002757 1.5e-36 156.8 188 50.5
Gohir.D11G326400 Gossypium hirsutum HOM05D001598 ORTHO05D002757 1.5e-36 156.8 142 60.6
Psat2g121440 Pisum sativum HOM05D001598 ORTHO05D002757 2.0e-36 156.4 176 52.8
TWI18G0113 Tripterygium wilfordii HOM05D001598 ORTHO05D002757 2.0e-36 156.4 173 53.8
Gohir.D02G129700 Gossypium hirsutum HOM05D001598 ORTHO05D002757 4.4e-36 155.2 141 61.0
SalBow2G2991 Salvia bowleyana HOM05D001598 ORTHO05D002757 5.7e-36 154.8 160 53.8
SalBow2G3361 Salvia bowleyana HOM05D001598 ORTHO05D002757 5.7e-36 154.8 162 53.7
CsaV3_1G041940 Cucumis sativus L. HOM05D001598 ORTHO05D002757 7.5e-36 154.5 146 57.5
Sabra15G0003000 Salix brachista HOM05D001598 ORTHO05D002757 9.8e-36 154.1 145 58.6
MELO3C015610.2 Cucumis melo HOM05D001598 ORTHO05D002757 1.3e-35 153.7 147 56.5
Lj8A728T10 Lonicera japonica HOM05D001598 ORTHO05D002757 1.3e-35 153.7 161 55.9
PSO017G4006 Papaver somniferum HOM05D001598 ORTHO05D002757 1.3e-35 153.7 151 54.3
Aqoxy3G00689 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 1.7e-35 153.3 147 58.5
CSS0022192 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 1.7e-35 153.3 161 54.0
DCAR_021706 Daucus carota HOM05D001598 ORTHO05D002757 2.2e-35 152.9 163 52.8
MSTRG.691 Avicennia marina HOM05D001598 ORTHO05D002757 2.8e-35 152.5 162 52.5
Glyma.02G105700 Glycine max HOM05D001598 ORTHO05D002757 2.8e-35 152.5 155 56.8
Potri.015G004400 Populus trichocarpa HOM05D001598 ORTHO05D002757 2.8e-35 152.5 145 58.6
ATR0564G259 Amborella trichopoda HOM05D001598 ORTHO05D002757 6.3e-35 151.4 140 56.4
Cpa.g.sc1763.1 Carica papaya HOM05D001598 ORTHO05D002757 6.3e-35 151.4 146 58.2
CARHR145320 Cardamine hirsuta HOM05D001598 ORTHO05D002757 8.3e-35 151.0 184 51.1
Oeu013623.1 Olea europaea HOM05D001598 ORTHO05D002757 1.1e-34 150.6 154 55.8
Phvul.002G086800 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 2.4e-34 149.4 152 56.6
unitig_22.g6913 Utricularia gibba HOM05D001598 ORTHO05D001528 3.1e-34 149.1 143 56.6
A02p33170 Brassica napus HOM05D001598 ORTHO05D002757 5.4e-34 148.3 144 56.9
BcaC03g17175 Brassica carinata HOM05D001598 ORTHO05D002757 7.0e-34 147.9 150 57.3
BraA02t08340Z Brassica rapa HOM05D001598 ORTHO05D002757 7.0e-34 147.9 146 57.5
PSO478G0282 Papaver somniferum HOM05D001598 ORTHO05D002757 7.0e-34 147.9 181 47.5
Sc11g0001820 Simmondsia chinensis HOM05D001598 ORTHO05D002757 7.0e-34 147.9 143 57.3
Ca_04769_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 9.2e-34 147.5 167 53.3
Ca_30734_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 9.2e-34 147.5 167 53.3
SGA_v2.0_scaffold53G19414 Striga asiatica HOM05D001598 ORTHO05D002757 9.2e-34 147.5 150 55.3
CANSAT64G1213 Cannabis sativa HOM05D001598 ORTHO05D002757 1.6e-33 146.7 155 51.0
BolC2t11190H Brassica oleracea HOM05D001598 ORTHO05D002757 4.5e-33 145.2 150 56.7
Ciclev10032165m.g Citrus clementina HOM05D001598 ORTHO05D002757 4.5e-33 145.2 182 51.6
Peaxi162Scf00026g03113 Petunia axillaris HOM05D001598 ORTHO05D002757 5.9e-33 144.8 144 56.2
VMungo1215G3305 Vigna mungo HOM05D001598 ORTHO05D002757 1.7e-32 143.3 153 52.9
C02p50980 Brassica napus HOM05D001598 ORTHO05D002757 2.9e-32 142.5 174 50.6
CDE06G1877 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 6.6e-32 141.4 144 58.3
RcHm_v2.0_Chr4g0440071 Rosa chinensis HOM05D001598 ORTHO05D002757 2.5e-31 139.4 130 57.7
CDE06G1865 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 4.3e-31 138.7 166 53.0
MBI05_g28392_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 1.6e-30 136.7 141 56.0
SGA_v2.0_scaffold4653G54517 Striga asiatica HOM05D001598 ORTHO05D002757 5.2e-29 131.7 162 50.6
Rhsim12G0061700 Rhododendron simsii HOM05D001645 ORTHO05D002757 6.8e-29 131.3 176 47.2
THA.LOC104805152 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 1.5e-28 130.2 143 55.2
Eucgr.G02513 Eucalyptus grandis HOM05D001598 ORTHO05D002757 2.0e-28 129.8 152 51.3
HPP92_016856 Vanilla planifolia HOM05D001598 ORTHO05D002757 2.9e-27 125.9 156 50.0
Lj3C1039T11 Lonicera japonica HOM05D001598 ORTHO05D002757 8.3e-27 124.4 129 55.8
Os03g0379400 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 6.0e-25 118.2 139 48.9
HPP92_016914 Vanilla planifolia HOM05D001598 ORTHO05D002757 7.5e-20 101.3 126 51.6
CiPaw.05G137200 Carya illinoinensis HOM05D001598 ORTHO05D002757 8.3e-19 97.8 86 61.6
Zm00001eb392280 Zea mays HOM05D001598 ORTHO05D002757 1.1e-18 97.4 173 38.7
PGSC0003DMG400009618 Solanum tuberosum HOM05D001598 ORTHO05D002757 2.1e-17 93.2 88 58.0
SEGI_27969 Sequoiadendron giganteum HOM05D001598 ORTHO05D002757 8.6e-16 87.8 180 34.4
FAN17G2100 Fragaria x ananassa HOM05D001598 ORTHO05D010176 7.3e-15 84.7 58 72.4
MSTRG.21240 Avicennia marina HOM05D001598 ORTHO05D002757 2.3e-08 63.2 134 35.1
CAN.G1156.51 Capsicum annuum HOM05D001598 ORTHO05D002757 2.3e-08 63.2 70 48.6
Nitab4.5_0002704g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 2.3e-08 63.2 70 48.6
Os01g0801700 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 2.3e-08 63.2 175 31.4
Aqoxy7G03836 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 3.0e-08 62.8 102 36.3
MD03G1229800 Malus domestica HOM05D001598 ORTHO05D002757 3.0e-08 62.8 70 48.6
Solyc05g056510.3 Solanum lycopersicum HOM05D001598 ORTHO05D002757 3.9e-08 62.4 106 36.8
Oeu050015.1 Olea europaea HOM05D001598 ORTHO05D002757 6.6e-08 61.6 70 47.1
MD11G1250300 Malus domestica HOM05D001598 ORTHO05D002757 8.6e-08 61.2 70 47.1
Nitab4.5_0000496g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 8.6e-08 61.2 107 38.3
CSS0038856 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 1.5e-07 60.5 57 47.4
Sopen05g034910 Solanum pennellii HOM05D001598 ORTHO05D002757 1.5e-07 60.5 106 35.8
Migut.D00847 Erythranthe guttata HOM05D001598 ORTHO05D002757 1.9e-07 60.1 132 30.3
MD10G1276700 Malus domestica HOM05D001598 ORTHO05D002757 1.9e-07 60.1 60 48.3
MD00G1080400 Malus domestica HOM05D001598 ORTHO05D002757 3.3e-07 59.3 60 48.3
THA.LOC104820518 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 3.3e-07 59.3 70 44.3
Nn7g37454 Nelumbo nucifera HOM05D001598 ORTHO05D002757 5.6e-07 58.5 70 44.3
SGA_v2.0_scaffold25G11133 Striga asiatica HOM05D001598 ORTHO05D002757 5.6e-07 58.5 107 34.6
unitig_699.g19728 Utricularia gibba HOM05D001598 ORTHO05D002757 5.6e-07 58.5 107 33.6
Ciclev10020578m.g Citrus clementina HOM05D001598 ORTHO05D002757 7.3e-07 58.2 70 42.9
Nn1g09429 Nelumbo nucifera HOM05D001598 ORTHO05D002757 7.3e-07 58.2 70 44.3
Peaxi162Scf00007g01329 Petunia axillaris HOM05D001598 ORTHO05D002757 7.3e-07 58.2 101 35.6
Prupe.4G179500 Prunus persica HOM05D001598 ORTHO05D002757 7.3e-07 58.2 70 44.3
PGR142G2642 Punica granatum HOM05D001598 ORTHO05D002757 9.5e-07 57.8 70 42.9
CiPaw.02G103200 Carya illinoinensis HOM05D001598 ORTHO05D002757 1.2e-06 57.4 57 43.9
Glyma.15G158100 Glycine max HOM05D001598 ORTHO05D002757 1.2e-06 57.4 70 42.9
GSVIVG01038094001 Vitis vinifera HOM05D001598 ORTHO05D002757 1.2e-06 57.4 107 35.5
ATR0757G133 Amborella trichopoda HOM05D001598 ORTHO05D002757 1.6e-06 57.0 70 42.9
Oeu027580.1 Olea europaea HOM05D001598 ORTHO05D002757 1.6e-06 57.0 71 46.5
QL03p060335 Quercus lobata HOM05D001598 ORTHO05D002757 2.1e-06 56.6 107 35.5
QL10p006125 Quercus lobata HOM05D001598 ORTHO05D002757 2.1e-06 56.6 107 35.5
Rhsim12G0173100 Rhododendron simsii HOM05D001598 ORTHO05D002757 2.1e-06 56.6 107 37.4
Atru.chr11.1498 Acer truncatum HOM05D001598 ORTHO05D002757 2.8e-06 56.2 111 34.2
Hund10980 Selenicereus undatus HOM05D001598 ORTHO05D002757 2.8e-06 56.2 57 45.6
SGA_v2.0_scaffold28G11982 Striga asiatica HOM05D001598 ORTHO05D002757 2.8e-06 56.2 108 32.4
TPR.G31851 Trifolium pratense HOM05D001598 ORTHO05D002757 2.8e-06 56.2 185 28.1
Cpa.g.sc48.118 Carica papaya HOM05D001598 ORTHO05D002757 3.6e-06 55.8 107 32.7
MBI07_g03083_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 3.6e-06 55.8 107 36.4
THA.LOC104821398 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 3.6e-06 55.8 101 36.6
Glyma.09G051800 Glycine max HOM05D001598 ORTHO05D002757 4.7e-06 55.5 91 38.5
Actinidia36797 Actinidia chinensis HOM05D001598 ORTHO05D002757 6.2e-06 55.1 100 39.0
Aa31LG11G1330 Aethionema arabicum HOM05D001598 ORTHO05D002757 6.2e-06 55.1 70 44.3
CANSAT80G0504 Cannabis sativa HOM05D001598 ORTHO05D002757 6.2e-06 55.1 70 44.3
CiPaw.01G173400 Carya illinoinensis HOM05D001598 ORTHO05D002757 6.2e-06 55.1 107 33.6
Sabra07G0108700 Salix brachista HOM05D001598 ORTHO05D002757 6.2e-06 55.1 70 45.7
Sabra07G0121000 Salix brachista HOM05D001598 ORTHO05D002757 6.2e-06 55.1 70 45.7
Dinv44166 Davidia involucrata HOM05D001598 ORTHO05D002757 8.1e-06 54.7 100 37.0
Manes.11G105600 Manihot esculenta HOM05D001598 ORTHO05D002757 8.1e-06 54.7 70 41.4
TAR626G1975 Trochodendron aralioides HOM05D001598 ORTHO05D002757 8.1e-06 54.7 159 27.7


User provided reference genes

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