Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 5.0e-249 864.0 440 100.0
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.0e-206 721.5 440 85.7
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 1.3e-156 557.0 468 62.8
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 4.2e-123 445.7 442 56.3
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 1.2e-101 374.4 439 47.4
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 4.6e-101 372.5 442 47.1
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 1.1e-99 367.9 438 46.6
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.2e-98 364.4 437 45.3
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 1.2e-98 364.4 441 47.6
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.6e-98 364.0 437 45.1
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.4e-97 360.9 444 46.6
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 6.8e-97 358.6 437 46.9
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 2.6e-96 356.7 437 44.6
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 2.6e-96 356.7 463 45.6
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.7e-95 354.0 437 44.4
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 3.7e-95 352.8 443 45.1
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 7.1e-94 348.6 442 44.6
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 1.2e-93 347.8 442 45.0
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 4.6e-93 345.9 442 45.2
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 1.1e-91 341.3 341 52.5
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 9.5e-91 338.2 438 43.2
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.2e-90 337.8 348 49.1
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 3.6e-90 336.3 446 44.6
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 6.2e-90 335.5 440 44.3
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 8.1e-90 335.1 443 44.2
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 1.4e-89 334.3 443 44.2
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.5e-88 330.9 438 41.8
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 2.0e-88 330.5 442 42.5
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 3.4e-88 329.7 438 42.5
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 4.4e-88 329.3 437 43.7
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 7.6e-88 328.6 440 42.3
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 1.3e-87 327.8 441 44.9
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 2.2e-87 327.0 440 43.2
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 2.9e-87 326.6 437 44.6
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 3.7e-87 326.2 438 44.3
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 4.9e-87 325.9 341 49.6
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 8.3e-87 325.1 439 43.3
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 1.9e-86 323.9 345 49.3
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.9e-86 323.9 438 42.2
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 9.2e-86 321.6 440 42.5
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 4.6e-85 319.3 440 43.9
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 1.0e-84 318.2 438 41.6
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 3.0e-84 316.6 229 70.7
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 6.6e-84 315.5 423 42.8
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 1.1e-83 314.7 451 41.2
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 2.5e-83 313.5 441 41.3
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 3.3e-83 313.2 439 43.1
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 7.3e-83 312.0 441 42.0
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.6e-82 310.8 442 41.9
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 2.1e-82 310.5 439 41.0
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 2.1e-82 310.5 446 40.8
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 2.1e-82 310.5 438 40.6
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 3.6e-82 309.7 438 42.0
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 4.7e-82 309.3 446 40.4
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 6.2e-82 308.9 439 40.1
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 8.1e-82 308.5 336 47.9
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 1.1e-81 308.1 439 40.1
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.4e-81 307.8 439 40.3
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 4.0e-81 306.2 443 42.7
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 6.8e-81 305.4 439 39.6
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 2.0e-80 303.9 439 41.0
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 7.6e-80 302.0 442 40.5
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 1.7e-79 300.8 437 38.7
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 3.8e-79 299.7 438 39.7
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 4.9e-79 299.3 438 40.0
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 1.4e-78 297.7 439 41.0
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.4e-78 297.7 442 38.9
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 4.2e-78 296.2 441 40.1
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 2.1e-77 293.9 435 40.2
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 2.7e-77 293.5 440 39.5
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 1.7e-76 290.8 452 40.9
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 5.1e-76 289.3 436 38.3
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 5.1e-76 289.3 440 40.0
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 8.7e-76 288.5 441 40.1
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.9e-75 287.3 441 39.9
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 1.9e-75 287.3 359 46.8
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 7.3e-75 285.4 443 40.4
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 4.8e-74 282.7 343 44.9
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 8.1e-74 282.0 304 48.4
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 1.4e-73 281.2 341 42.8
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 2.4e-73 280.4 443 40.0
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 3.1e-73 280.0 272 53.3
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.2e-72 278.1 299 49.5
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 1.2e-72 278.1 345 46.7
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 2.3e-68 263.8 443 36.6
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 4.3e-67 259.6 438 35.4
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 5.3e-65 252.7 418 37.1
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 5.3e-65 252.7 231 55.8
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 2.2e-63 247.3 443 37.9
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 2.2e-63 247.3 443 37.9
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 1.5e-56 224.6 291 41.9
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 3.8e-55 219.9 233 48.5
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 7.4e-51 205.7 330 39.4
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 1.6e-50 204.5 346 39.0
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 3.1e-41 173.7 375 31.5
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 2.6e-40 170.6 353 33.4
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 3.2e-38 163.7 283 37.1
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 6.7e-36 156.0 288 36.5
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 6.9e-33 146.0 227 41.0
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 1.1e-27 128.6 247 34.0
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 5.7e-27 126.3 200 37.5
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.7e-26 124.8 84 71.4
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 8.5e-23 112.5 335 27.8
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.8e-17 94.7 175 32.0
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 1.3e-15 88.6 108 43.5
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 1.2e-13 82.0 108 40.7
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.0e-07 62.4 96 34.4


User provided reference genes

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