Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.3e-93 345.5 166 100.0
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.0e-82 308.1 147 99.3
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.7e-80 302.8 189 77.8
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.2e-75 286.6 189 74.6
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.6e-73 278.9 189 70.9
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.1e-70 269.2 189 68.8
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 1.7e-69 266.2 190 70.0
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 3.9e-69 265.0 185 68.1
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 1.5e-68 263.1 190 65.3
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 1.5e-68 263.1 189 67.2
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 3.3e-68 261.9 186 67.7
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 5.6e-68 261.2 189 67.7
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 1.6e-67 259.6 186 68.3
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.1e-67 259.2 189 67.2
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 2.1e-67 259.2 186 67.7
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.1e-67 259.2 147 80.3
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.1e-67 259.2 147 80.3
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 8.1e-67 257.3 188 67.0
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 1.1e-66 256.9 185 67.0
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 3.1e-66 255.4 187 65.8
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.1e-66 255.4 187 65.8
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 4.0e-66 255.0 187 65.8
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 4.0e-66 255.0 185 65.4
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 5.2e-66 254.6 144 78.5
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 6.8e-66 254.2 190 66.8
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 8.9e-66 253.8 187 65.2
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 8.9e-66 253.8 188 66.0
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 8.9e-66 253.8 189 66.1
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 8.9e-66 253.8 166 72.3
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 8.9e-66 253.8 186 66.7
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-65 253.4 187 65.2
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.2e-65 253.4 187 65.2
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.2e-65 253.4 189 67.2
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 5.8e-65 251.1 186 65.6
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 5.8e-65 251.1 186 65.1
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 7.5e-65 250.8 189 65.6
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 7.5e-65 250.8 189 64.0
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 7.5e-65 250.8 147 78.2
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 9.9e-65 250.4 149 77.2
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 1.7e-64 249.6 186 64.5
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 2.2e-64 249.2 190 65.3
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.2e-64 249.2 189 65.1
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 2.2e-64 249.2 191 66.0
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 2.9e-64 248.8 186 64.5
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 3.7e-64 248.4 183 66.1
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 4.9e-64 248.1 186 64.0
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 6.4e-64 247.7 186 66.1
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 8.3e-64 247.3 184 64.7
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 1.4e-63 246.5 186 65.6
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.4e-63 246.5 205 61.0
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.9e-63 246.1 188 66.0
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 2.4e-63 245.7 190 62.1
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 2.4e-63 245.7 189 65.6
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 2.4e-63 245.7 188 64.4
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.2e-63 245.4 187 63.6
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 5.4e-63 244.6 184 64.1
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 7.1e-63 244.2 186 63.4
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 7.1e-63 244.2 184 63.6
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 7.1e-63 244.2 184 65.8
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 9.2e-63 243.8 185 65.4
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 9.2e-63 243.8 184 63.6
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 9.2e-63 243.8 183 65.6
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 1.6e-62 243.0 186 63.4
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.6e-62 243.0 189 65.1
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 2.1e-62 242.7 185 62.2
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 3.5e-62 241.9 186 62.9
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 3.5e-62 241.9 186 62.9
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 3.5e-62 241.9 187 63.6
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.6e-62 241.5 149 73.8
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 4.6e-62 241.5 149 73.8
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 7.8e-62 240.7 147 74.1
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 7.8e-62 240.7 147 73.5
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 1.3e-61 240.0 186 62.4
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.3e-61 240.0 146 78.1
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 3.9e-61 238.4 186 61.8
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 3.9e-61 238.4 186 61.8
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 5.1e-61 238.0 185 61.1
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 8.6e-61 237.3 188 63.8
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.5e-60 236.5 147 72.8
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 2.5e-60 235.7 187 62.0
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 2.5e-60 235.7 186 63.4
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.3e-60 235.3 166 71.1
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 3.3e-60 235.3 184 61.4
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 4.3e-60 235.0 186 62.4
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 7.3e-60 234.2 144 75.0
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 2.8e-59 232.3 182 61.0
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 6.2e-59 231.1 188 60.6
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 6.2e-59 231.1 177 65.0
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 6.2e-59 231.1 182 61.0
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 8.1e-59 230.7 185 61.1
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 4.0e-58 228.4 146 69.9
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 5.2e-58 228.0 185 60.0
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.6e-57 225.7 135 76.3
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 2.6e-57 225.7 185 61.1
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.9e-55 219.5 190 60.5
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 7.1e-55 217.6 188 54.8
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 9.3e-55 217.2 148 69.6
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.2e-54 216.9 147 64.6
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.6e-54 216.5 188 61.7
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 2.1e-54 216.1 143 66.4
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 6.0e-54 214.5 144 68.1
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.0e-53 213.8 147 63.9
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.6e-51 205.3 150 68.7
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 8.1e-51 204.1 186 56.5
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 2.4e-50 202.6 164 62.2
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 3.1e-50 202.2 166 57.8
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.2e-49 200.3 190 53.7
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 2.0e-49 199.5 184 54.3
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 1.3e-48 196.8 150 65.3
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.4e-47 193.4 148 62.8
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.4e-47 193.4 144 65.3
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.9e-47 193.0 165 58.8
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 1.9e-47 193.0 189 53.4
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.4e-47 192.6 144 65.3
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 3.2e-47 192.2 179 53.6
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 6.0e-46 188.0 151 64.9
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 6.6e-45 184.5 149 60.4
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 6.2e-43 177.9 158 56.3
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 2.0e-41 172.9 187 49.2
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 1.0e-37 160.6 111 66.7
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 7.6e-33 144.4 109 59.6
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 3.2e-23 112.5 120 50.0
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 6.9e-18 94.7 95 51.6
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.5e-17 92.0 84 56.0
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 3.8e-16 89.0 82 58.5
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.6e-14 82.4 72 59.7
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 2.8e-11 72.8 79 46.8


User provided reference genes

Program Settings