Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.7e-225 786.9 972 100.0
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 3.0e-206 723.0 972 94.1
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 4.6e-130 469.9 970 74.1
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 1.8e-118 431.4 705 66.4
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 1.5e-107 395.2 705 63.0
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 5.4e-94 350.1 705 67.2
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 1.7e-84 318.5 970 66.6
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 2.9e-84 317.8 736 56.7
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 3.3e-83 314.3 677 60.0
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.7e-79 302.0 652 56.4
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 1.8e-78 298.5 171 82.5
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 4.1e-78 297.4 688 60.2
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 5.4e-78 297.0 675 63.4
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 7.0e-78 296.6 170 82.9
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 1.6e-77 295.4 171 82.5
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 2.0e-77 295.0 167 84.4
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 2.7e-77 294.7 167 84.4
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 4.6e-77 293.9 170 82.4
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 5.9e-77 293.5 169 81.7
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 1.0e-76 292.7 170 80.6
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 3.9e-76 290.8 172 81.4
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 4.3e-75 287.3 171 79.5
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 4.3e-75 287.3 169 79.9
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 5.6e-75 287.0 172 81.4
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 5.6e-75 287.0 172 81.4
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 7.3e-75 286.6 172 81.4
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 7.3e-75 286.6 170 79.4
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 1.6e-74 285.4 169 79.9
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 2.1e-74 285.0 172 80.8
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 1.8e-73 282.0 171 79.5
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 1.8e-73 282.0 169 80.5
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 1.8e-73 282.0 165 79.4
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 4.0e-73 280.8 162 82.7
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 5.2e-73 280.4 169 77.5
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 8.9e-73 279.6 168 79.2
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 4.4e-72 277.3 172 76.2
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 5.8e-72 276.9 198 71.7
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 9.8e-72 276.2 158 82.9
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 2.9e-71 274.6 162 79.6
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 1.9e-70 271.9 170 75.3
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 2.4e-70 271.6 166 78.9
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 3.2e-70 271.2 170 74.7
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 7.0e-70 270.0 170 74.1
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.0e-69 268.5 171 77.2
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 3.5e-69 267.7 159 78.6
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 1.7e-68 265.4 659 60.8
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 4.3e-67 260.8 148 81.8
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 1.6e-66 258.8 157 77.7
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 1.4e-65 255.8 159 75.5
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 3.1e-65 254.6 649 53.9
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 1.3e-63 249.2 151 78.8
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 4.1e-62 244.2 171 67.3
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 7.1e-62 243.4 159 74.8
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 4.6e-61 240.7 135 82.2
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 1.3e-60 239.2 174 66.7
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 2.3e-60 238.4 133 86.5
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 2.5e-59 235.0 144 77.8
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 4.3e-59 234.2 127 88.2
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 1.6e-58 232.3 973 52.8
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 6.2e-58 230.3 127 86.6
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 1.1e-57 229.6 124 88.7
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 2.3e-57 228.4 128 85.2
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 2.3e-57 228.4 124 87.9
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 6.8e-57 226.9 127 84.3
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 5.8e-56 223.8 128 85.2
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 9.9e-56 223.0 125 86.4
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 9.9e-56 223.0 125 86.4
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.7e-55 222.2 127 81.9
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.7e-55 222.2 127 81.9
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 1.9e-54 218.8 125 82.4
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 4.1e-54 217.6 118 90.7
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 5.4e-54 217.2 129 79.8
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 5.4e-54 217.2 126 82.5
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 9.2e-54 216.5 126 82.5
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 1.2e-53 216.1 127 80.3
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 6.0e-53 213.8 123 84.6
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.0e-52 213.0 126 78.6
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 1.0e-52 213.0 126 78.6
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 8.6e-52 209.9 117 87.2
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 1.1e-51 209.5 125 80.0
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.9e-51 208.8 125 76.8
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 8.1e-50 203.4 124 78.2
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 8.1e-50 203.4 124 78.2
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 1.1e-49 203.0 170 57.1
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 4.4e-48 197.6 118 79.7
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 5.1e-44 184.1 123 78.0
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 5.8e-40 170.6 161 55.9
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 3.0e-36 158.3 93 73.1
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 2.0e-32 145.6 83 78.3
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 5.8e-32 144.1 171 43.3
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 6.7e-28 130.6 200 37.0
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 7.4e-27 127.1 117 53.0
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 2.8e-26 125.2 148 47.3
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 2.8e-26 125.2 152 45.4
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 1.1e-25 123.2 70 77.1
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 2.4e-25 122.1 69 79.7
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 1.0e-23 116.7 84 61.9
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 3.8e-23 114.8 170 36.5
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 7.9e-21 107.1 60 80.0
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 3.0e-20 105.1 144 44.4
vmacro22172 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 3.1e-17 95.1 80 51.2
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 4.3e-11 74.7 91 42.9
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 1.3e-10 73.2 156 30.1
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 1.3e-10 73.2 142 31.0
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 2.2e-10 72.4 139 31.7
VMungo0251G0884 Vigna mungo HOM05D006877 ORTHO05D008735 2.2e-10 72.4 50 70.0
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 2.8e-10 72.0 142 30.3
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 2.8e-10 72.0 103 34.0
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 3.7e-10 71.6 120 31.7
Lalb_Chr13g0294621 Lupinus albus HOM05D006877 ORTHO05D008735 4.8e-10 71.2 73 45.2
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 6.3e-10 70.9 142 28.9
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 6.3e-10 70.9 142 31.0
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 8.2e-10 70.5 124 30.6
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 8.2e-10 70.5 124 33.1
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 1.4e-09 69.7 149 27.5
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 1.4e-09 69.7 142 30.3
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.8e-09 69.3 128 31.2
MELO3C014273.2 Cucumis melo HOM05D002479 ORTHO05D002675 2.4e-09 68.9 120 30.8
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 3.1e-09 68.6 142 29.6
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 3.1e-09 68.6 139 30.9
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 5.3e-09 67.8 127 28.3
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 9.1e-09 67.0 143 30.8
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 9.1e-09 67.0 142 28.9
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 1.2e-08 66.6 142 28.2
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.2e-08 66.6 142 28.2
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 1.2e-08 66.6 129 30.2
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.2e-08 66.6 142 30.3
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 1.2e-08 66.6 135 26.7
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.5e-08 66.2 142 28.2
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.5e-08 66.2 142 28.2
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 2.0e-08 65.9 142 29.6
Potri.013G144800 Populus trichocarpa HOM05D002479 ORTHO05D002675 2.0e-08 65.9 116 33.6
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.6e-08 65.5 142 27.5
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 2.6e-08 65.5 142 30.3
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 4.5e-08 64.7 125 33.6
HanXRQChr06g0184931 Helianthus annuus HOM05D002479 ORTHO05D002675 5.9e-08 64.3 137 24.8
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 5.9e-08 64.3 142 29.6
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 7.7e-08 63.9 110 33.6
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 7.7e-08 63.9 142 28.2
Medtr1g040765 Medicago truncatula HOM05D002479 ORTHO05D002675 7.7e-08 63.9 133 27.1
VMungo0251G3229 Vigna mungo HOM05D006877 ORTHO05D008735 7.7e-08 63.9 57 50.9
Cpa.g.sc34.115 Carica papaya HOM05D002479 ORTHO05D002675 1.0e-07 63.5 141 30.5
Migut.N00231 Erythranthe guttata HOM05D002479 ORTHO05D002675 1.0e-07 63.5 137 26.3
Lju1074C3T5 Lonicera japonica HOM05D002479 ORTHO05D002675 1.0e-07 63.5 129 28.7
Sabra13G0116800 Salix brachista HOM05D002479 ORTHO05D002675 1.0e-07 63.5 116 32.8
Prupe.3G233300 Prunus persica HOM05D002479 ORTHO05D002675 1.3e-07 63.2 142 28.2
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 1.7e-07 62.8 127 27.6
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 1.7e-07 62.8 142 27.5
Ca_12209_v3 Cicer arietinum L. HOM05D002479 ORTHO05D002675 2.2e-07 62.4 128 28.1
FAN17G1196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.2e-07 62.4 126 29.4
SalBow7G2923 Salvia bowleyana HOM05D002479 ORTHO05D002675 2.2e-07 62.4 108 32.4
vmacro20006 Vaccinium macrocarpon HOM05D002479 ORTHO05D002675 2.2e-07 62.4 116 26.7
AT1G73710 Arabidopsis thaliana HOM05D002479 ORTHO05D002675 3.8e-07 61.6 125 30.4
CiPaw.01G192700 Carya illinoinensis HOM05D002479 ORTHO05D002675 5.0e-07 61.2 104 30.8
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 5.0e-07 61.2 122 30.3
Os03g0162900 Oryza sativa ssp. japonica HOM05D002479 ORTHO05D002675 5.0e-07 61.2 115 27.0
TPR.G22484 Trifolium pratense HOM05D002479 ORTHO05D002675 5.0e-07 61.2 115 27.8
AL2G33510 Arabidopsis lyrata HOM05D002479 ORTHO05D002675 6.5e-07 60.8 125 30.4
Manes.13G150200 Manihot esculenta HOM05D002479 ORTHO05D002675 6.5e-07 60.8 142 28.9
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 6.5e-07 60.8 113 28.3
Sc19g0003840 Simmondsia chinensis HOM05D002479 ORTHO05D002675 6.5e-07 60.8 117 29.9
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 8.5e-07 60.5 122 29.5
FAN22G0099 Fragaria x ananassa HOM05D002479 ORTHO05D002675 8.5e-07 60.5 126 28.6
ATR0693G368 Amborella trichopoda HOM05D002479 ORTHO05D002675 1.1e-06 60.1 150 26.7
FvH4_4g02020 Fragaria vesca HOM05D002479 ORTHO05D002675 1.1e-06 60.1 103 31.1
FAN12G1103 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.1e-06 60.1 103 31.1
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 1.4e-06 59.7 126 29.4
HanXRQChr14g0428761 Helianthus annuus HOM05D002479 ORTHO05D002675 1.4e-06 59.7 103 33.0
Lsat_1_v5_gn_5_67920 Lactuca sativa HOM05D002479 ORTHO05D002675 1.4e-06 59.7 91 35.2
BcaB03g15076 Brassica carinata HOM05D002479 ORTHO05D002675 2.5e-06 58.9 126 31.0
CBR_g32196 Chara braunii HOM05D000001 ORTHO05D000003 2.5e-06 58.9 97 35.1
Lj6g0009664 Lotus japonicus HOM05D002479 ORTHO05D002675 2.5e-06 58.9 112 27.7
Lj8P116T32 Lonicera japonica HOM05D002479 ORTHO05D002675 4.2e-06 58.2 113 29.2
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 4.2e-06 58.2 127 29.9
Sc06g0009220 Simmondsia chinensis HOM05D002479 ORTHO05D002675 4.2e-06 58.2 93 32.3
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 5.5e-06 57.8 122 28.7
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 5.5e-06 57.8 137 27.0
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 7.2e-06 57.4 39 69.2
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 7.2e-06 57.4 120 28.3
Medtr5g042370 Medicago truncatula HOM05D002479 ORTHO05D002675 7.2e-06 57.4 120 28.3
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 9.4e-06 57.0 149 24.2
Eucgr.K00941 Eucalyptus grandis HOM05D002479 ORTHO05D002675 9.4e-06 57.0 142 28.2
Zm00001eb004770 Zea mays HOM05D002479 ORTHO05D002675 9.4e-06 57.0 140 23.6


User provided reference genes

Program Settings