Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.6e-277 958.7 481 100.0
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.3e-262 907.5 531 86.3
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 2.9e-226 788.5 538 77.0
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 1.1e-214 750.0 535 73.5
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 3.3e-206 721.8 540 70.9
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 2.1e-168 596.3 556 59.9
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 5.2e-167 591.7 573 58.6
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 7.1e-164 581.3 566 58.5
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 5.1e-162 575.1 557 58.3
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 1.6e-160 570.1 557 58.9
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 3.4e-158 562.4 542 59.4
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 5.8e-158 561.6 562 56.8
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 9.9e-158 560.8 552 57.8
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.4e-156 557.0 551 57.2
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 3.2e-156 555.8 582 56.0
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 7.8e-155 551.2 565 56.8
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 8.7e-154 547.7 570 55.6
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 1.1e-153 547.4 558 56.5
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 1.6e-152 543.5 567 56.3
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.6e-152 543.5 572 56.3
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 4.8e-152 542.0 551 56.1
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 6.2e-152 541.6 549 56.3
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 8.1e-152 541.2 555 56.4
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 6.9e-151 538.1 555 56.0
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 2.0e-150 536.6 550 56.4
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 2.0e-150 536.6 571 54.5
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.6e-150 536.2 565 55.4
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 5.8e-150 535.0 549 56.1
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.3e-149 533.9 567 56.4
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.7e-149 533.5 549 56.1
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 2.2e-149 533.1 549 55.9
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 1.1e-148 530.8 567 54.9
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 2.4e-148 529.6 560 54.1
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.4e-148 529.6 555 55.9
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 4.2e-148 528.9 562 53.9
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 5.4e-148 528.5 552 55.3
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 9.3e-148 527.7 565 54.9
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 2.7e-147 526.2 572 53.7
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 6.0e-147 525.0 593 51.6
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 2.3e-146 523.1 563 54.2
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.0e-146 522.7 572 53.3
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.5e-145 520.4 561 54.2
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 1.9e-145 520.0 569 53.1
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 4.3e-145 518.8 572 53.3
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 5.6e-145 518.5 571 53.4
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 1.3e-144 517.3 556 53.6
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 2.1e-144 516.5 561 54.0
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 6.2e-144 515.0 558 53.6
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 8.1e-144 514.6 549 55.2
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 8.1e-144 514.6 545 55.0
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 8.1e-144 514.6 558 53.4
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 1.1e-143 514.2 577 52.9
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.4e-143 513.1 595 52.3
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 6.9e-143 511.5 563 54.0
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 1.5e-142 510.4 565 53.1
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 2.0e-142 510.0 554 53.6
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 2.6e-142 509.6 545 54.1
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 3.4e-142 509.2 574 52.6
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 3.4e-142 509.2 589 51.6
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 2.9e-141 506.1 567 52.9
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.4e-140 503.8 548 54.0
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.9e-140 503.4 546 54.0
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 2.4e-140 503.1 547 55.0
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 2.4e-140 503.1 542 53.5
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 1.2e-139 500.7 549 53.7
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 3.5e-139 499.2 566 52.1
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 4.6e-139 498.8 561 54.7
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 6.0e-139 498.4 542 53.3
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.0e-138 497.7 566 53.0
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 1.8e-138 496.9 538 53.9
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 3.0e-138 496.1 558 52.9
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 3.0e-138 496.1 559 54.6
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.9e-137 493.4 553 52.8
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 9.6e-137 491.1 564 51.6
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 2.1e-136 490.0 560 53.9
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 8.1e-136 488.0 539 52.9
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 8.1e-136 488.0 569 51.8
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.4e-135 486.5 603 50.2
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.5e-134 483.8 562 51.4
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 3.4e-134 482.6 534 53.7
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 2.9e-133 479.6 543 51.9
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 2.9e-133 479.6 544 52.0
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 2.9e-133 479.6 592 50.2
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 3.8e-133 479.2 543 51.9
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 4.9e-133 478.8 543 51.9
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 4.9e-133 478.8 551 54.3
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 6.5e-133 478.4 553 51.9
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 8.4e-133 478.0 543 52.1
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 9.3e-132 474.6 576 50.5
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 7.4e-129 464.9 515 51.8
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 7.4e-129 464.9 544 52.2
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 3.1e-127 459.5 524 53.6
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.2e-126 457.6 555 51.2
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 1.2e-126 457.6 537 51.4
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 2.0e-126 456.8 578 49.5
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 2.0e-126 456.8 508 54.1
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 3.2e-124 449.5 539 51.4
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 6.1e-123 445.3 474 56.3
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.4e-119 433.3 529 50.3
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 6.9e-119 431.8 552 48.2
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 9.0e-119 431.4 547 49.2
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.9e-117 426.4 608 46.5
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 2.3e-114 416.8 449 57.2
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 5.3e-111 405.6 525 49.1
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.1e-108 397.9 516 48.3
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.8e-106 390.6 516 48.1
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 8.2e-104 381.7 315 63.5
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 3.8e-101 372.9 601 41.9
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 6.3e-96 355.5 574 42.9
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 1.8e-79 300.8 348 50.3
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 4.2e-76 289.7 471 43.1
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 3.0e-74 283.5 376 46.5
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 3.4e-73 280.0 221 67.4
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 5.7e-73 279.3 220 66.8
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 3.6e-67 260.0 320 49.7
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 1.8e-66 257.7 535 35.3
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 2.2e-64 250.8 318 50.0
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 4.1e-63 246.5 323 47.7
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 7.5e-57 225.7 202 62.9
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 2.4e-55 220.7 812 27.7
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 4.6e-54 216.5 205 56.6
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 1.6e-51 208.0 790 27.1
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 4.9e-48 196.4 359 40.9
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.0e-45 187.2 183 56.3
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 4.3e-44 183.3 359 38.7
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.5e-41 174.9 179 47.5
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.8e-34 151.4 287 38.0
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 5.4e-31 139.8 279 38.4
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 3.3e-28 130.6 141 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.5e-25 121.7 412 30.1
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 4.6e-22 110.2 218 37.6
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 2.3e-21 107.8 384 26.8
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 6.7e-21 106.3 96 60.4
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 6.5e-16 89.7 79 60.8
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 7.1e-15 86.3 54 70.4
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 8.4e-08 62.8 47 59.6
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 5.5e-07 60.1 184 33.2
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 1.6e-06 58.5 59 47.5


User provided reference genes

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