Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2353.2 1177 100.0
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2215.3 1189 93.4
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1930.6 1216 80.3
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1829.3 1203 77.0
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1711.4 1203 71.2
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1533.5 1203 64.9
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1430.6 1219 60.4
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 1388.6 1209 59.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 1387.5 1208 58.0
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 1366.7 1207 57.9
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 1364.0 1211 57.8
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 1359.4 1207 57.7
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 1343.6 1206 57.9
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 1338.6 1204 58.3
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 1338.6 1316 53.4
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 1338.2 1213 57.0
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1335.9 1211 57.7
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 1330.9 1210 56.5
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 1329.7 1209 56.2
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 1316.6 1211 56.6
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1316.6 1232 55.6
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 1313.9 1202 56.6
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 1309.7 1209 55.7
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1309.3 1210 56.0
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1308.1 1219 56.1
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1300.8 1206 56.0
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1300.4 1210 56.4
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 1297.7 1212 56.4
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1297.0 1212 56.2
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 1294.3 1210 55.7
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1287.7 1215 55.4
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1286.6 1226 55.1
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 1285.8 1219 55.5
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1285.0 1209 56.2
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 1283.1 1208 55.0
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 1282.7 1205 55.4
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 1280.8 1207 55.3
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1277.7 1205 55.2
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 1275.4 1205 54.9
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 1272.3 1207 55.5
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 1272.3 1205 54.8
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1271.5 1206 53.8
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 1268.1 1205 54.2
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 1267.3 1204 54.4
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1263.4 1212 54.2
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 1258.0 1242 54.1
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 1255.7 1206 54.1
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 1252.3 1215 52.8
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1251.5 1206 54.2
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 1246.9 1206 53.4
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 1245.3 1202 53.3
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1241.1 1207 54.3
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1235.7 1206 54.5
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1234.2 1207 52.6
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 1233.0 1211 52.5
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 1232.6 1209 53.8
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1226.8 1210 52.2
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 1225.3 1210 51.8
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1220.7 1206 52.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 1216.1 1192 52.9
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1209.5 1217 53.5
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1208.0 1265 52.0
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1207.6 1193 53.6
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 1204.5 1215 51.7
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1200.7 1220 50.3
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1189.9 1198 53.8
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1187.2 1210 50.8
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1186.0 1210 50.8
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1185.6 1210 50.8
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1185.6 1210 50.8
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1184.9 1219 53.6
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1177.2 1204 52.9
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 1176.8 1210 52.4
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1175.2 1212 50.6
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1171.8 1200 51.4
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1170.2 1205 51.7
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1163.7 1196 50.4
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 1162.9 1210 52.4
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 1137.1 1210 51.3
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1132.5 1221 50.2
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1115.5 1212 49.6
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1091.3 1209 48.6
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 2.2e-304 1049.3 1119 52.0
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 9.7e-300 1033.9 945 56.5
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 4.4e-292 1008.4 1017 51.6
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 8.9e-261 904.4 1148 45.0
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 9.2e-258 894.4 1235 43.4
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 5.4e-242 842.0 1223 42.2
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 2.5e-239 833.2 596 68.8
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 1.0e-227 794.7 903 46.4
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 1.1e-218 764.6 1250 37.0
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 3.3e-207 726.5 1136 39.7
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 8.2e-206 721.8 802 48.0
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.1e-205 721.5 658 57.4
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 2.7e-140 504.2 469 56.7
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 3.9e-139 500.4 637 44.9
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 9.9e-119 432.6 554 46.0
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 3.5e-116 424.1 451 49.7
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.8e-97 361.3 337 59.3
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 5.7e-90 337.0 219 73.1
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 7.9e-84 316.6 374 44.9
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 2.9e-78 298.1 224 65.6
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.5e-61 242.7 211 59.2
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 8.8e-59 233.4 197 64.0
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.4e-48 199.5 153 64.1
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.4e-48 199.5 146 65.8
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.8e-48 199.1 152 64.5
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 1.0e-46 193.4 164 62.2
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.3e-46 193.0 441 30.4
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 3.9e-46 191.4 153 64.1
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.6e-44 186.0 105 84.8
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 4.0e-43 181.4 239 45.2
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-43 180.3 632 24.4
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 3.6e-36 158.3 210 46.2
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.7e-36 157.9 177 53.1
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 3.2e-32 145.2 209 41.6
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 4.7e-28 131.3 331 31.1
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 7.6e-26 124.0 113 51.3
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 3.0e-22 112.1 139 47.5
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 4.3e-21 108.2 64 81.2
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.8e-19 102.8 154 39.0
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 9.3e-16 90.5 539 22.3
vmacro03486 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 2.7e-15 89.0 531 23.4
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 1.1e-13 83.6 119 43.7
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 1.9e-13 82.8 102 43.1
CiPaw.06G000600 Carya illinoinensis HOM05D002653 ORTHO05D002623 4.3e-13 81.6 422 22.0
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 1.6e-12 79.7 598 20.4
CSS0041142 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 6.2e-12 77.8 516 20.9
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 2.4e-11 75.9 497 21.3
Atru.chr8.1038_Atru.chr8.1039 Acer truncatum HOM05D002653 ORTHO05D002623 3.1e-11 75.5 441 20.4
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 4.0e-11 75.1 516 20.3
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 9.0e-11 73.9 417 22.1
Eucgr.K01355 Eucalyptus grandis HOM05D002653 ORTHO05D002623 1.2e-10 73.6 218 25.7
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 3.4e-10 72.0 481 22.0
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 4.5e-10 71.6 540 21.5
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 4.5e-10 71.6 380 21.8
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 2.9e-09 68.9 491 21.6
QL04p064964 Quercus lobata HOM05D002653 ORTHO05D002623 2.9e-09 68.9 388 23.5
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 3.8e-09 68.6 52 67.3
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 3.8e-09 68.6 424 21.5
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.8e-09 68.6 79 41.8
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 3.8e-09 68.6 526 20.5
MBI12_g09298_MAGBIO Magnolia biondii HOM05D002653 ORTHO05D002623 4.9e-09 68.2 457 21.0
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 4.9e-09 68.2 320 22.8
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 6.4e-09 67.8 479 20.7
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 8.4e-09 67.4 483 21.3
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 8.4e-09 67.4 483 21.3
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 8.4e-09 67.4 483 21.3
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 1.1e-08 67.0 220 25.0
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 1.4e-08 66.6 312 21.5
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 1.4e-08 66.6 302 21.2
TAR624G1146 Trochodendron aralioides HOM05D002653 ORTHO05D002623 1.4e-08 66.6 499 20.2
Haze_24505 Corylus avellana HOM05D002653 ORTHO05D002623 1.9e-08 66.2 418 22.2
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 1.9e-08 66.2 328 21.3
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 1.9e-08 66.2 470 21.1
arahy.Tifrunner.gnm1.ann1.21MRAZ Arachis hypogaea HOM05D002653 ORTHO05D002623 3.2e-08 65.5 312 21.5
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 3.2e-08 65.5 311 22.5
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 3.2e-08 65.5 466 21.0
Gohir.D04G020351 Gossypium hirsutum HOM05D002653 ORTHO05D002623 5.4e-08 64.7 483 21.3
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 5.4e-08 64.7 472 20.6
Cpa.g.sc119.2 Carica papaya HOM05D002653 ORTHO05D002623 7.1e-08 64.3 558 21.3
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 7.1e-08 64.3 409 22.0
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 7.1e-08 64.3 464 20.3
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 7.1e-08 64.3 254 22.4
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 7.1e-08 64.3 462 20.8
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 9.3e-08 63.9 649 18.3
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.2e-07 63.5 521 21.9
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 1.2e-07 63.5 475 20.2
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 3.5e-07 62.0 220 24.5
Ca_14756_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 4.6e-07 61.6 176 26.1
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 4.6e-07 61.6 224 24.6
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 4.6e-07 61.6 241 25.3
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 4.6e-07 61.6 424 21.5
Zm00001eb260890 Zea mays HOM05D002653 ORTHO05D002623 4.6e-07 61.6 479 20.7
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 7.9e-07 60.8 382 20.7
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 7.9e-07 60.8 254 22.0
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 1.8e-06 59.7 317 22.1
Lsat_1_v5_gn_9_22560 Lactuca sativa HOM05D000737 ORTHO05D000581 3.9e-06 58.5 33 72.7
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 6.7e-06 57.8 335 22.1
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 6.7e-06 57.8 141 29.1


User provided reference genes

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