Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 0.0e+00 1639.8 900 100.0
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 0.0e+00 1453.0 917 87.9
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 0.0e+00 1105.5 820 75.4
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 0.0e+00 1099.3 922 67.9
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 7.4e-308 1060.4 873 68.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.5e-260 903.3 930 55.7
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 1.5e-260 903.3 929 58.9
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 4.9e-259 898.3 936 56.6
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 1.9e-258 896.3 931 56.5
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 1.7e-251 873.2 936 56.0
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.9e-247 859.8 874 55.8
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.4e-245 852.8 890 55.5
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 1.5e-244 850.1 938 53.6
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.5e-244 850.1 946 53.9
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 9.9e-244 847.4 916 55.6
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.2e-243 846.3 939 55.3
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 2.4e-242 842.8 915 54.1
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 2.4e-242 842.8 873 57.4
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 4.2e-242 842.0 925 53.3
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 5.4e-242 841.6 887 56.8
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 7.1e-242 841.3 922 53.8
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 7.3e-239 831.2 918 53.6
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 6.2e-238 828.2 923 53.7
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 8.1e-238 827.8 926 53.6
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.8e-237 826.6 916 53.6
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 4.9e-235 818.5 938 55.0
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 2.4e-234 816.2 931 52.5
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 4.2e-234 815.5 921 53.0
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 7.1e-234 814.7 879 54.3
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 9.6e-231 804.3 871 54.8
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.3e-230 803.9 880 54.1
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 6.2e-230 801.6 945 51.4
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.4e-229 800.4 940 53.2
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.4e-229 799.7 872 55.5
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.0e-228 796.6 875 54.3
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 9.9e-228 794.3 883 52.8
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 8.4e-227 791.2 870 54.3
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.1e-226 790.8 884 53.3
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 1.1e-226 790.8 880 53.5
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.4e-226 789.6 873 53.8
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 3.2e-226 789.3 822 57.1
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 9.3e-226 787.7 870 53.8
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 2.7e-225 786.2 863 53.9
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 3.5e-225 785.8 870 53.9
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.9e-223 780.0 888 53.3
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 3.3e-223 779.2 933 51.6
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.7e-222 775.8 883 52.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 4.8e-222 775.4 887 52.1
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 6.2e-222 775.0 850 54.6
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 6.9e-221 771.5 880 53.1
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.2e-220 770.8 931 52.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 4.5e-220 768.8 830 54.0
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 1.1e-218 764.2 937 49.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.1e-218 764.2 941 50.9
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 4.2e-218 762.3 886 52.8
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.6e-217 760.4 920 51.4
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 2.7e-217 759.6 884 52.5
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.3e-216 757.3 902 52.0
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.8e-216 756.9 916 51.0
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 6.7e-216 755.0 927 50.5
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 8.7e-216 754.6 960 48.9
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.5e-215 753.8 917 50.9
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 9.6e-215 751.1 925 49.6
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 9.6e-215 751.1 935 51.3
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 6.9e-213 745.0 828 53.9
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 1.2e-212 744.2 851 51.8
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.9e-211 739.6 887 50.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 7.2e-210 734.9 920 50.1
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 3.0e-208 729.6 878 50.2
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 6.7e-208 728.4 946 48.5
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 8.7e-208 728.0 891 49.4
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 5.7e-207 725.3 915 48.9
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 5.7e-207 725.3 879 51.3
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 9.7e-207 724.5 930 48.5
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 5.3e-205 718.8 814 52.8
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 2.2e-203 713.4 861 50.4
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 5.0e-203 712.2 729 57.5
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 6.5e-203 711.8 930 47.7
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 1.4e-202 710.7 861 50.2
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 6.1e-201 705.3 803 52.7
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 1.0e-200 704.5 866 50.1
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.4e-200 704.1 853 50.2
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 8.8e-200 701.4 859 49.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 8.8e-200 701.4 927 46.8
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 4.4e-199 699.1 882 49.3
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 1.3e-198 697.6 855 48.9
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 1.7e-198 697.2 851 49.7
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 4.1e-197 692.6 880 48.5
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 1.3e-195 687.6 852 49.9
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.3e-195 687.6 872 50.0
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 7.2e-194 681.8 846 48.0
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-192 677.9 906 46.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 5.2e-192 675.6 932 45.9
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 3.3e-191 672.9 854 48.6
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.5e-188 662.9 926 46.5
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.0e-187 661.4 907 45.9
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 3.8e-187 659.4 916 46.0
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 5.0e-187 659.1 928 45.3
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.5e-186 657.5 921 45.5
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 4.2e-186 656.0 866 47.2
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.7e-183 645.6 854 46.8
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.7e-182 644.0 868 46.5
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 1.4e-181 641.0 783 49.4
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 4.1e-181 639.4 915 45.0
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-180 637.1 749 52.1
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 1.5e-175 620.9 848 45.6
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 2.0e-175 620.5 932 43.6
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 5.9e-164 582.4 908 42.5
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.0e-163 581.6 827 45.7
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.9e-163 580.1 857 44.0
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.8e-163 579.7 859 44.0
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.8e-161 573.5 862 44.0
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.4e-160 571.2 614 54.2
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 8.6e-155 552.0 575 57.0
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 1.3e-150 538.1 853 43.1
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.3e-147 528.1 1065 38.4
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 2.3e-147 527.3 681 49.6
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 3.0e-139 500.4 632 49.7
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 3.8e-126 456.8 771 42.2
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.1e-124 451.1 821 38.9
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 4.0e-120 436.8 873 36.7
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.1e-117 428.7 404 60.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 9.6e-114 415.6 1025 32.9
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 4.8e-113 413.3 453 51.0
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 7.4e-106 389.4 922 37.0
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 6.9e-104 382.9 442 53.2
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.9e-101 374.8 998 33.3
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 1.3e-89 335.5 871 32.3
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 1.3e-89 335.5 871 32.3
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 3.7e-89 334.0 349 53.0
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 3.4e-87 327.4 861 33.4
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 8.8e-83 312.8 359 49.9
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.7e-82 310.1 283 58.7
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 9.7e-82 309.3 283 58.0
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 1.2e-76 292.4 1007 29.2
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 7.2e-69 266.5 818 31.9
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.1e-68 265.0 218 63.8
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 1.4e-64 252.3 200 63.5
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 8.0e-60 236.5 311 46.3
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 6.3e-57 226.9 827 28.1
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.8e-56 225.3 449 37.9
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 9.1e-56 223.0 398 40.7
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 2.0e-55 221.9 394 41.4
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.9e-53 215.3 394 40.6
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 6.1e-52 210.3 406 39.9
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 5.7e-50 203.8 333 41.1
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 3.1e-48 198.0 391 40.2
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 1.8e-43 182.2 146 65.8
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 5.8e-42 177.2 287 40.4
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 3.2e-40 171.4 301 41.5
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 4.1e-40 171.0 354 36.7
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.1e-37 162.9 179 55.9
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 3.3e-37 161.4 975 25.5
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 5.6e-37 160.6 674 27.9
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 3.6e-36 157.9 297 38.0
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 3.6e-36 157.9 174 50.6
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.2e-36 157.1 196 48.0
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.0e-36 156.8 331 39.3
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-33 149.1 212 46.2
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.2e-33 148.7 203 41.9
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 6.0e-31 140.6 130 53.1
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 3.0e-30 138.3 169 50.3
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.9e-29 135.6 291 37.1
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 2.1e-28 132.1 290 35.9
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.2e-24 118.2 115 63.5
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.4e-24 117.5 821 24.4
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 4.3e-21 107.8 291 32.6
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 2.8e-20 105.1 291 32.0
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.1e-19 103.2 131 44.3
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 8.1e-12 77.0 60 60.0
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.8e-10 70.9 140 40.0
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 9.9e-10 70.1 87 46.0
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 3.8e-09 68.2 87 47.1
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 1.1e-08 66.6 323 29.4
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 5.1e-06 57.8 221 24.9


User provided reference genes

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