Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62026459 Chenopodium quinoa HOM05D005453 ORTHO05D006520 1.7e-293 1011.9 515 100.0
AUR62026269 Chenopodium quinoa HOM05D005453 ORTHO05D006520 2.7e-262 908.3 541 87.4
EL10Ac6g13139 Beta vulgaris HOM05D005453 ORTHO05D006520 2.2e-179 632.9 560 64.1
Hund05918 Selenicereus undatus HOM05D005453 ORTHO05D006520 1.3e-139 500.7 546 54.2
Hund25276 Selenicereus undatus HOM05D005453 ORTHO05D006520 4.3e-127 459.1 591 50.8
Sc11g0001640 Simmondsia chinensis HOM05D005453 ORTHO05D006520 3.2e-114 416.4 540 48.3
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 7.2e-114 415.2 476 54.4
QL03p065960 Quercus lobata HOM05D005453 ORTHO05D006520 2.3e-104 383.6 546 46.5
Haze_12074 Corylus avellana HOM05D005453 ORTHO05D006520 1.3e-102 377.9 490 49.0
Cfa009044 Carpinus fangiana HOM05D005453 ORTHO05D006520 2.8e-102 376.7 489 48.7
Ciclev10031079m.g Citrus clementina HOM05D005453 ORTHO05D006520 1.1e-101 374.8 582 43.1
Prupe.1G266900 Prunus persica HOM05D005453 ORTHO05D006520 1.2e-100 371.3 490 46.5
Actinidia19854 Actinidia chinensis HOM05D005453 ORTHO05D006520 2.6e-100 370.2 579 43.4
Manes.01G191800 Manihot esculenta HOM05D005453 ORTHO05D006520 1.2e-97 361.3 546 46.2
Thecc.02G232200 Theobroma cacao HOM05D005453 ORTHO05D006520 6.1e-97 359.0 468 46.4
MD13G1079900 Malus domestica HOM05D005453 ORTHO05D006520 1.0e-96 358.2 532 43.6
Gorai.005G189700 Gossypium raimondii HOM05D005453 ORTHO05D006520 2.0e-95 354.0 475 46.5
CiPaw.05G140600 Carya illinoinensis HOM05D005453 ORTHO05D006520 4.8e-94 349.4 464 47.8
COL.COLO4_36184 Corchorus olitorius HOM05D005453 ORTHO05D006520 1.4e-93 347.8 472 45.8
Gohir.D02G169300 Gossypium hirsutum HOM05D005453 ORTHO05D006520 1.8e-93 347.4 475 46.3
PGR102G2554 Punica granatum HOM05D005453 ORTHO05D006520 3.1e-93 346.7 549 41.9
Potri.010G034600 Populus trichocarpa HOM05D005453 ORTHO05D006520 2.2e-91 340.5 554 41.7
Duzib268G1123 Durio zibethinus HOM05D005453 ORTHO05D006520 8.5e-91 338.6 469 45.0
FvH4_4g32100 Fragaria vesca HOM05D005453 ORTHO05D006520 3.2e-90 336.7 496 42.9
COL.COLO4_34957 Corchorus olitorius HOM05D005453 ORTHO05D006520 2.1e-89 334.0 475 43.6
RcHm_v2.0_Chr4g0440791 Rosa chinensis HOM05D005453 ORTHO05D006520 2.1e-89 334.0 491 43.0
Dinv34193 Davidia involucrata HOM05D005453 ORTHO05D006520 2.7e-89 333.6 520 42.9
Potri.008G194300 Populus trichocarpa HOM05D005453 ORTHO05D006520 1.0e-88 331.6 509 42.8
CANSAT64G2233 Cannabis sativa HOM05D005453 ORTHO05D006520 1.8e-88 330.9 482 44.2
ClCG05G024670 Citrullus lanatus HOM05D005453 ORTHO05D006520 1.8e-88 330.9 490 43.5
FAN12G1353 Fragaria x ananassa HOM05D005453 ORTHO05D006520 1.8e-88 330.9 496 43.1
Hma1.2p1_0265F.1_g106550 Hydrangea macrophylla HOM05D005453 ORTHO05D006520 1.5e-87 327.8 480 43.3
FAN22G2419 Fragaria x ananassa HOM05D005453 ORTHO05D006520 2.6e-87 327.0 528 42.6
Nitab4.5_0002382g0040 Nicotiana tabacum HOM05D005453 ORTHO05D006520 5.7e-87 325.9 559 41.0
MSTRG.666 Avicennia marina HOM05D005453 ORTHO05D006520 2.4e-85 320.5 537 40.4
Nitab4.5_0002291g0010 Nicotiana tabacum HOM05D005453 ORTHO05D006520 2.4e-85 320.5 567 39.7
Rhsim12G0129300 Rhododendron simsii HOM05D005453 ORTHO05D006520 4.1e-85 319.7 468 43.8
CSS0029199 Camellia sinensis var. sinensis HOM05D005453 ORTHO05D006520 5.4e-85 319.3 554 39.4
CsaV3_5G032260 Cucumis sativus L. HOM05D005453 ORTHO05D006520 1.6e-84 317.8 480 42.5
Nitab4.5_0000679g0110 Nicotiana tabacum HOM05D005453 ORTHO05D006520 2.7e-84 317.0 536 42.4
MELO3C012058.2 Cucumis melo HOM05D005453 ORTHO05D006520 3.5e-84 316.6 482 43.8
Nn4g23024 Nelumbo nucifera HOM05D005453 ORTHO05D006520 2.3e-83 313.9 572 38.8
MD16G1079800 Malus domestica HOM05D005453 ORTHO05D006520 2.9e-83 313.5 467 42.6
PGSC0003DMG400017617 Solanum tuberosum HOM05D005453 ORTHO05D006520 4.2e-82 309.7 550 39.3
MBI05_g12576_MAGBIO Magnolia biondii HOM05D005453 ORTHO05D006520 9.5e-82 308.5 477 41.3
Sp1g21710 Schrenkiella parvula HOM05D005453 ORTHO05D006520 9.5e-82 308.5 482 43.6
THA.LOC104822093 Tarenaya hassleriana HOM05D005453 ORTHO05D006520 9.5e-82 308.5 501 42.1
Peaxi162Scf00209g00610 Petunia axillaris HOM05D005453 ORTHO05D006520 1.6e-81 307.8 468 42.5
Nitab4.5_0002969g0050 Nicotiana tabacum HOM05D005453 ORTHO05D006520 2.1e-81 307.4 481 43.5
TWI75G0114 Tripterygium wilfordii HOM05D005453 ORTHO05D006520 2.1e-81 307.4 474 42.4
TPR.G29465 Trifolium pratense HOM05D005453 ORTHO05D006520 2.8e-81 307.0 493 41.2
Gohir.A03G146000 Gossypium hirsutum HOM05D005453 ORTHO05D006520 3.6e-81 306.6 422 45.5
Eucgr.B03405 Eucalyptus grandis HOM05D005453 ORTHO05D006520 6.1e-81 305.8 465 42.8
AUR62041893 Chenopodium quinoa HOM05D008659 ORTHO05D010848 8.0e-81 305.4 162 97.5
vmacro16321 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 1.4e-80 304.7 448 43.5
Glyma.02G022500 Glycine max HOM05D005453 ORTHO05D006520 1.8e-80 304.3 483 41.2
Solyc05g006930.3 Solanum lycopersicum HOM05D005453 ORTHO05D006520 8.9e-80 302.0 479 41.8
Sabra10G0030200 Salix brachista HOM05D005453 ORTHO05D006520 4.4e-79 299.7 589 37.9
BcaB07g32384 Brassica carinata HOM05D005453 ORTHO05D006520 7.5e-79 298.9 483 42.9
DCAR_031056 Daucus carota HOM05D005453 ORTHO05D006520 7.5e-79 298.9 472 41.1
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 9.8e-79 298.5 483 43.9
BolC5t31089H Brassica oleracea HOM05D005453 ORTHO05D006520 1.3e-78 298.1 483 43.9
AT1G27070 Arabidopsis thaliana HOM05D005453 ORTHO05D006520 1.7e-78 297.7 492 40.4
Nn3g17115 Nelumbo nucifera HOM05D005453 ORTHO05D006520 2.8e-78 297.0 501 41.1
SGA_v2.0_scaffold163G38065 Striga asiatica HOM05D005453 ORTHO05D006520 2.8e-78 297.0 474 41.4
Sopen05g002890 Solanum pennellii HOM05D005453 ORTHO05D006520 3.7e-78 296.6 477 41.5
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 4.9e-78 296.2 481 43.2
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 4.9e-78 296.2 481 43.2
Carub.0001s2390 Capsella rubella HOM05D005453 ORTHO05D006520 1.1e-77 295.0 485 41.4
PGSC0003DMG400026781 Solanum tuberosum HOM05D005453 ORTHO05D006520 1.4e-77 294.7 463 43.0
Peaxi162Scf00026g02226 Petunia axillaris HOM05D005453 ORTHO05D006520 2.4e-77 293.9 506 40.3
Sabra08G0147800 Salix brachista HOM05D005453 ORTHO05D006520 5.4e-77 292.7 572 38.1
Lalb_Chr10g0097931 Lupinus albus HOM05D005453 ORTHO05D006520 1.6e-76 291.2 476 41.0
Glyma.01G041500 Glycine max HOM05D005453 ORTHO05D006520 2.0e-76 290.8 482 40.7
Sopen01g006070 Solanum pennellii HOM05D005453 ORTHO05D006520 2.7e-76 290.4 464 42.0
Oeu011701.1 Olea europaea HOM05D005453 ORTHO05D006520 7.8e-76 288.9 475 41.5
Duzib248G1267 Durio zibethinus HOM05D005453 ORTHO05D006520 1.3e-75 288.1 423 43.3
CAN.G27.11 Capsicum annuum HOM05D005453 ORTHO05D006520 1.7e-75 287.7 467 42.0
Medtr5g038210 Medicago truncatula HOM05D005453 ORTHO05D006520 5.0e-75 286.2 536 38.4
Oeu057176.2 Olea europaea HOM05D005453 ORTHO05D006520 1.5e-74 284.6 430 41.6
Phvul.002G067500 Phaseolus vulgaris HOM05D005453 ORTHO05D006520 1.5e-74 284.6 501 39.1
VMungo1215G2350 Vigna mungo HOM05D005453 ORTHO05D006520 1.5e-74 284.6 504 40.1
TAR374G0997 Trochodendron aralioides HOM05D005453 ORTHO05D006520 1.9e-74 284.3 555 38.0
CAN.G827.6 Capsicum annuum HOM05D005453 ORTHO05D006520 2.5e-74 283.9 469 42.4
PSO017G4002 Papaver somniferum HOM05D005453 ORTHO05D006520 2.1e-73 280.8 481 39.3
Sed0004157 Sechium edule HOM05D005453 ORTHO05D006520 6.1e-73 279.3 423 41.6
Ca_07371_v3 Cicer arietinum L. HOM05D005453 ORTHO05D006520 6.8e-72 275.8 513 37.6
Thhalv10007340m.g Eutrema salsugineum HOM05D005453 ORTHO05D006520 6.8e-72 275.8 505 38.6
Sed0006777 Sechium edule HOM05D005453 ORTHO05D006520 8.9e-72 275.4 529 38.0
Aa31LG7G8080 Aethionema arabicum HOM05D005453 ORTHO05D006520 9.8e-71 271.9 448 42.0
Lj2g0004726 Lotus japonicus HOM05D005453 ORTHO05D006520 6.4e-70 269.2 487 39.6
Aqoxy3G03253 Aquilegia oxysepala HOM05D005453 ORTHO05D006520 1.1e-69 268.5 518 36.7
PSO478G0523 Papaver somniferum HOM05D005453 ORTHO05D006520 5.4e-69 266.2 478 39.5
ECA234G1124 Erigeron canadensis HOM05D005453 ORTHO05D006520 2.0e-68 264.2 463 37.8
SalBow2G2835 Salvia bowleyana HOM05D005453 ORTHO05D006520 2.7e-68 263.8 471 38.2
arahy.Tifrunner.gnm1.ann1.62035P Arachis hypogaea HOM05D005453 ORTHO05D006520 1.7e-67 261.2 468 39.1
arahy.Tifrunner.gnm1.ann1.7H81I7 Arachis hypogaea HOM05D005453 ORTHO05D006520 5.0e-67 259.6 544 36.9
Cc11_g13580 Coffea canephora HOM05D005453 ORTHO05D006520 5.6e-66 256.1 384 44.0
Lsat_1_v5_gn_8_53620 Lactuca sativa HOM05D005453 ORTHO05D006520 5.6e-66 256.1 451 37.5
Migut.L01350 Erythranthe guttata HOM05D005453 ORTHO05D006520 9.5e-66 255.4 566 33.6
GSVIVG01020082001 Vitis vinifera HOM05D005453 ORTHO05D006520 1.4e-64 251.5 361 43.8
arahy.Tifrunner.gnm1.ann1.C864RN Arachis hypogaea HOM05D005453 ORTHO05D006520 2.3e-64 250.8 545 36.3
ATR0665G247 Amborella trichopoda HOM05D005453 ORTHO05D006520 2.1e-60 237.7 501 35.5
BcaC05g26346 Brassica carinata HOM05D005453 ORTHO05D006520 3.5e-60 236.9 353 46.7
AL1G38420 Arabidopsis lyrata HOM05D005453 ORTHO05D006520 1.5e-58 231.5 489 35.8
HanXRQChr08g0209161 Helianthus annuus HOM05D005453 ORTHO05D006520 4.3e-58 229.9 454 34.1
unitig_22.g6530 Utricularia gibba HOM05D005453 ORTHO05D006520 3.6e-57 226.9 465 36.3
TAR622G1188 Trochodendron aralioides HOM05D005453 ORTHO05D006520 8.1e-57 225.7 380 41.3
Os03g0686900 Oryza sativa ssp. japonica HOM05D005453 ORTHO05D006520 1.1e-53 215.3 474 34.6
CARHR024830 Cardamine hirsuta HOM05D005453 ORTHO05D006520 3.2e-53 213.8 265 48.3
CDE06G1042 Ceratophyllum demersum HOM05D005453 ORTHO05D006520 5.6e-50 203.0 468 33.3
Actinidia08209 Actinidia chinensis HOM05D005453 ORTHO05D006520 7.3e-50 202.6 423 35.9
Atru.chr11.1866 Acer truncatum HOM05D005453 ORTHO05D006520 1.6e-49 201.4 353 40.2
Psat2g125480 Pisum sativum HOM05D005453 ORTHO05D006520 4.0e-48 196.8 447 36.0
Zm00001eb217200 Zea mays HOM05D005453 ORTHO05D006520 5.2e-48 196.4 488 32.4
Sc04g0008480 Simmondsia chinensis HOM05D005453 ORTHO05D006520 7.1e-45 186.0 423 32.4
MSTRG.7832 Avicennia marina HOM05D005453 ORTHO05D006520 1.2e-44 185.3 182 54.4
FAN07G1475 Fragaria x ananassa HOM05D005453 ORTHO05D006520 1.5e-42 178.3 310 41.9
SEGI_23512 Sequoiadendron giganteum HOM05D005453 ORTHO05D006520 4.8e-41 173.3 514 30.2
Zm00001eb053230 Zea mays HOM05D005453 ORTHO05D006520 1.1e-37 162.2 419 31.7
HPP92_018829 Vanilla planifolia HOM05D005453 ORTHO05D006520 2.1e-36 157.9 463 29.4
Atru.chr11.1865 Acer truncatum HOM05D005453 ORTHO05D006520 2.3e-35 154.5 128 60.2
Cpa.g.c42295 Carica papaya HOM05D005453 ORTHO05D006520 3.6e-33 147.1 98 74.5
Solyc01g010460.4 Solanum lycopersicum HOM05D005453 ORTHO05D006520 1.4e-32 145.2 310 36.8
Solyc01g010470.2 Solanum lycopersicum HOM05D005453 ORTHO05D006520 9.9e-31 139.0 133 56.4
Oeu026503.1 Olea europaea HOM05D005453 ORTHO05D006520 3.9e-27 127.1 244 38.5
Mapoly0020s0141 Marchantia polymorpha HOM05D005453 ORTHO05D006520 1.9e-21 108.2 147 44.9
CBR_g23347 Chara braunii HOM05D005453 ORTHO05D006520 3.5e-20 104.0 193 33.7
FAN07G0689 Fragaria x ananassa HOM05D005453 ORTHO05D006520 4.6e-20 103.6 215 38.6
SMO353G0350 Selaginella moellendorffii HOM05D005453 ORTHO05D006520 2.4e-16 91.3 114 39.5
Cpa.g.sc1308.1 Carica papaya HOM05D005453 ORTHO05D006520 2.0e-15 88.2 137 39.4
HanXRQChr03g0092811 Helianthus annuus HOM05D005453 ORTHO05D006520 1.3e-14 85.5 91 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2704 Anthoceros agrestis HOM05D005453 ORTHO05D006520 8.4e-14 82.8 135 37.0
Lalb_Chr04g0256401 Lupinus albus HOM05D005453 ORTHO05D006520 1.4e-13 82.0 256 31.6
HanXRQChr03g0092801 Helianthus annuus HOM05D005453 ORTHO05D006520 1.2e-12 79.0 61 55.7
Cpa.g.c46071 Carica papaya HOM05D005453 ORTHO05D006520 1.1e-10 72.4 107 43.9
TPR.G23943 Trifolium pratense HOM05D005453 ORTHO05D006520 1.9e-10 71.6 49 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2026 Anthoceros agrestis HOM05D007148 ORTHO05D009047 1.1e-08 65.9 163 24.5
CDE06G1945 Ceratophyllum demersum HOM05D005453 ORTHO05D006520 1.4e-08 65.5 262 28.2
Pp3c15_1130 Physcomitrium patens HOM05D007148 ORTHO05D009047 3.1e-08 64.3 161 28.0
Oeu001597.1 Olea europaea HOM05D005453 ORTHO05D006520 1.2e-07 62.4 33 78.8
Actinidia08210 Actinidia chinensis HOM05D005453 ORTHO05D006520 2.0e-07 61.6 68 50.0
FAN09G1323 Fragaria x ananassa HOM05D007148 ORTHO05D009047 1.3e-06 58.9 338 22.5
FAN14G3336 Fragaria x ananassa HOM05D007148 ORTHO05D009047 6.5e-06 56.6 314 22.0


User provided reference genes

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