Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025550 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.4e-106 389.8 389 100.0
AUR62035998 Chenopodium quinoa HOM05D006844 ORTHO05D008504 2.7e-41 173.7 283 98.6
AUR62041622 Chenopodium quinoa HOM05D006844 ORTHO05D008504 4.4e-39 166.4 286 95.5
Hund11892 Selenicereus undatus HOM05D006844 ORTHO05D008504 8.3e-22 109.0 62 82.3
Gohir.D04G080600 Gossypium hirsutum HOM05D006844 ORTHO05D008504 1.1e-21 108.6 62 80.6
Gorai.012G091600 Gossypium raimondii HOM05D006844 ORTHO05D008504 1.1e-21 108.6 62 80.6
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 1.4e-21 108.2 59 84.7
Manes.17G108800 Manihot esculenta HOM05D006844 ORTHO05D008504 1.9e-21 107.8 61 83.6
Gohir.A05G342700 Gossypium hirsutum HOM05D006844 ORTHO05D008504 3.2e-21 107.1 62 79.0
Nitab4.5_0000935g0090 Nicotiana tabacum HOM05D006844 ORTHO05D008504 4.1e-21 106.7 60 81.7
Solyc02g093620.2 Solanum lycopersicum HOM05D006844 ORTHO05D008504 4.1e-21 106.7 60 81.7
Sopen02g038250 Solanum pennellii HOM05D006844 ORTHO05D008504 4.1e-21 106.7 60 81.7
PGSC0003DMG400012620 Solanum tuberosum HOM05D006844 ORTHO05D008504 4.1e-21 106.7 60 81.7
TWI12G0359 Tripterygium wilfordii HOM05D006844 ORTHO05D008504 4.1e-21 106.7 61 78.7
Actinidia36147 Actinidia chinensis HOM05D006844 ORTHO05D008504 5.4e-21 106.3 281 78.3
SalBow1G4663 Salvia bowleyana HOM05D006844 ORTHO05D008504 5.4e-21 106.3 62 77.4
CSS0042583 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 7.0e-21 105.9 61 77.0
CSS0048025 Camellia sinensis var. sinensis HOM05D006844 ORTHO05D008504 7.0e-21 105.9 61 77.0
Glyma.19G080500 Glycine max HOM05D006844 ORTHO05D008504 7.0e-21 105.9 62 80.6
Peaxi162Scf00420g00214 Petunia axillaris HOM05D006844 ORTHO05D008504 7.0e-21 105.9 60 80.0
Sc07g0004300 Simmondsia chinensis HOM05D006844 ORTHO05D008504 7.0e-21 105.9 61 78.7
CAN.G473.42 Capsicum annuum HOM05D006844 ORTHO05D008504 9.2e-21 105.5 60 80.0
Haze_14791 Corylus avellana HOM05D006844 ORTHO05D008504 9.2e-21 105.5 62 80.6
Nitab4.5_0001031g0200 Nicotiana tabacum HOM05D006844 ORTHO05D008504 9.2e-21 105.5 60 80.0
Cfa007302 Carpinus fangiana HOM05D006844 ORTHO05D008504 1.2e-20 105.1 61 80.3
Cc07_g00220 Coffea canephora HOM05D006844 ORTHO05D008504 1.2e-20 105.1 60 78.3
SGA_v2.0_scaffold135G34928 Striga asiatica HOM05D006844 ORTHO05D008504 1.2e-20 105.1 61 78.7
MELO3C014826.2 Cucumis melo HOM05D006844 ORTHO05D008504 2.0e-20 104.4 62 75.8
Phvul.008G145600 Phaseolus vulgaris HOM05D006844 ORTHO05D008504 2.0e-20 104.4 62 77.4
Nn4g22496 Nelumbo nucifera HOM05D006844 ORTHO05D008504 3.5e-20 103.6 61 77.0
Os12g0283900 Oryza sativa ssp. japonica HOM05D006844 ORTHO05D008504 3.5e-20 103.6 63 71.4
MSTRG.24057 Avicennia marina HOM05D006844 ORTHO05D008504 4.6e-20 103.2 61 77.0
CsaV3_3G027490 Cucumis sativus L. HOM05D006844 ORTHO05D008504 4.6e-20 103.2 61 77.0
Migut.H00039 Erythranthe guttata HOM05D006844 ORTHO05D008504 4.6e-20 103.2 62 74.2
Duzib147G1239 Durio zibethinus HOM05D006844 ORTHO05D008504 6.0e-20 102.8 57 82.5
Glyma.16G066300 Glycine max HOM05D006844 ORTHO05D008504 6.0e-20 102.8 61 78.7
VMungo1080G0705 Vigna mungo HOM05D006844 ORTHO05D008504 6.0e-20 102.8 62 74.2
CiPaw.03G048400 Carya illinoinensis HOM05D006844 ORTHO05D008504 1.0e-19 102.1 61 77.0
ClCG05G013040 Citrullus lanatus HOM05D006844 ORTHO05D008504 1.0e-19 102.1 61 75.4
Thecc.04G024500 Theobroma cacao HOM05D006844 ORTHO05D008504 1.0e-19 102.1 59 76.3
Dinv33400 Davidia involucrata HOM05D006844 ORTHO05D008504 1.3e-19 101.7 59 76.3
Lsat_1_v5_gn_2_93460 Lactuca sativa HOM05D006844 ORTHO05D008504 1.3e-19 101.7 63 73.0
DCAR_011279 Daucus carota HOM05D006844 ORTHO05D008504 1.7e-19 101.3 57 80.7
HanXRQChr07g0199131 Helianthus annuus HOM05D006844 ORTHO05D008504 1.7e-19 101.3 61 75.4
Ca_03833_v3 Cicer arietinum L. HOM05D006844 ORTHO05D008504 2.3e-19 100.9 63 73.0
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 6.6e-19 99.4 61 73.8
Eucgr.J02268 Eucalyptus grandis HOM05D006844 ORTHO05D008504 6.6e-19 99.4 61 70.5
Rhsim10G0012800 Rhododendron simsii HOM05D006844 ORTHO05D008504 6.6e-19 99.4 60 75.0
Zm00001eb273000 Zea mays HOM05D006844 ORTHO05D008504 8.6e-19 99.0 62 71.0
arahy.Tifrunner.gnm1.ann1.QHJM8I Arachis hypogaea HOM05D006844 ORTHO05D008504 1.1e-18 98.6 59 74.6
PGR083G0468 Punica granatum HOM05D006844 ORTHO05D008504 1.9e-18 97.8 61 73.8
Lj1g0000789 Lotus japonicus HOM05D006844 ORTHO05D008504 3.3e-18 97.1 57 75.4
vmacro05902 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 5.6e-18 96.3 63 66.7
vmacro05904 Vaccinium macrocarpon HOM05D006844 ORTHO05D008504 5.6e-18 96.3 61 70.5
Hma1.2p1_0818F.1_g223470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 4.7e-17 93.2 52 76.9
Psat3g169440 Pisum sativum HOM05D006844 ORTHO05D008504 6.2e-17 92.8 61 68.9
HPP92_010824 Vanilla planifolia HOM05D006844 ORTHO05D008504 1.8e-16 91.3 63 63.5
TPR.G1077 Trifolium pratense HOM05D006844 ORTHO05D008504 4.0e-16 90.1 63 65.1
COL.COLO4_29236 Corchorus olitorius HOM05D006844 ORTHO05D008504 6.8e-16 89.4 52 75.0
Lj7P604T32 Lonicera japonica HOM05D006844 ORTHO05D008504 8.9e-16 89.0 53 69.8
Ciclev10014357m.g Citrus clementina HOM05D006844 ORTHO05D008504 1.2e-15 88.6 48 83.3
RcHm_v2.0_Chr1g0336521 Rosa chinensis HOM05D006844 ORTHO05D008504 1.2e-15 88.6 50 74.0
Prupe.2G095300 Prunus persica HOM05D006844 ORTHO05D008504 1.5e-15 88.2 47 83.0
FvH4_7g06820 Fragaria vesca HOM05D006844 ORTHO05D008504 2.0e-15 87.8 48 79.2
FAN01G2612 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.0e-15 87.8 48 79.2
FAN03G0177 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.0e-15 87.8 48 79.2
FAN10G3353 Fragaria x ananassa HOM05D006844 ORTHO05D008504 2.0e-15 87.8 48 79.2
Atru.chr6.2466 Acer truncatum HOM05D006844 ORTHO05D008504 2.6e-15 87.4 49 79.6
TAR374G0379 Trochodendron aralioides HOM05D006844 ORTHO05D008504 4.4e-15 86.7 49 75.5
QL02p073443 Quercus lobata HOM05D006844 ORTHO05D008504 5.8e-15 86.3 49 79.6
CANSAT64G2991 Cannabis sativa HOM05D006844 ORTHO05D008504 1.3e-14 85.1 49 75.5
Sed0025706 Sechium edule HOM05D006844 ORTHO05D008504 1.3e-14 85.1 47 80.9
TAR622G0321 Trochodendron aralioides HOM05D006844 ORTHO05D008504 1.7e-14 84.7 48 75.0
MD09G1019500 Malus domestica HOM05D006844 ORTHO05D008504 2.9e-14 84.0 46 80.4
MD17G1020100 Malus domestica HOM05D006844 ORTHO05D008504 2.9e-14 84.0 46 80.4
PSO017G3485 Papaver somniferum HOM05D006844 ORTHO05D008504 4.9e-14 83.2 51 70.6
Potri.017G070800 Populus trichocarpa HOM05D006844 ORTHO05D008504 4.9e-14 83.2 48 77.1
BcaB01g05118 Brassica carinata HOM05D006844 ORTHO05D008504 6.4e-14 82.8 51 72.5
BcaB01g06331 Brassica carinata HOM05D006844 ORTHO05D008504 6.4e-14 82.8 51 72.5
CARHR198970 Cardamine hirsuta HOM05D006844 ORTHO05D008504 6.4e-14 82.8 48 72.9
Sp6g29690 Schrenkiella parvula HOM05D006844 ORTHO05D008504 6.4e-14 82.8 48 72.9
Sabra06G0144800 Salix brachista HOM05D006844 ORTHO05D008504 1.1e-13 82.0 48 75.0
Sabra17G0063000 Salix brachista HOM05D006844 ORTHO05D008504 1.1e-13 82.0 48 75.0
BcaB01g05117 Brassica carinata HOM05D006844 ORTHO05D008504 1.9e-13 81.3 47 72.3
C03p07580 Brassica napus HOM05D006844 ORTHO05D008504 1.9e-13 81.3 47 72.3
BolC3t13259H Brassica oleracea HOM05D006844 ORTHO05D008504 1.9e-13 81.3 46 73.9
Hma1.2p1_0818F.1_g223460 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.9e-13 81.3 59 64.4
MBI13_g29568_MAGBIO Magnolia biondii HOM05D006844 ORTHO05D008504 1.9e-13 81.3 47 72.3
Pp3c26_10760 Physcomitrium patens HOM05D006844 ORTHO05D008504 1.9e-13 81.3 61 57.4
BcaB01g06378 Brassica carinata HOM05D006844 ORTHO05D008504 2.4e-13 80.9 45 77.8
A03p06560 Brassica napus HOM05D006844 ORTHO05D008504 2.4e-13 80.9 47 72.3
BraA03t09988Z Brassica rapa HOM05D006844 ORTHO05D008504 2.4e-13 80.9 47 72.3
Carub.0005s1288 Capsella rubella HOM05D006844 ORTHO05D008504 3.2e-13 80.5 48 70.8
PSO478G2097 Papaver somniferum HOM05D006844 ORTHO05D008504 4.1e-13 80.1 49 71.4
Aqoxy3G01340 Aquilegia oxysepala HOM05D006844 ORTHO05D008504 5.4e-13 79.7 45 77.8
Lalb_Chr14g0362981 Lupinus albus HOM05D006844 ORTHO05D008504 2.7e-12 77.4 45 73.3
ATR0824G256 Amborella trichopoda HOM05D006844 ORTHO05D008504 6.0e-12 76.3 47 66.0
Oeu023834.1 Olea europaea HOM05D006844 ORTHO05D008504 7.8e-12 75.9 59 66.1
Aa31LG11G15140 Aethionema arabicum HOM05D006844 ORTHO05D008504 1.3e-11 75.1 43 74.4
AL6G25060 Arabidopsis lyrata HOM05D006844 ORTHO05D008504 1.3e-11 75.1 43 74.4
Thhalv10015672m.g Eutrema salsugineum HOM05D006844 ORTHO05D008504 1.3e-11 75.1 43 74.4
THA.LOC104821106 Tarenaya hassleriana HOM05D006844 ORTHO05D008504 1.7e-11 74.7 43 79.1
AagrBONN_evm.TU.Sc2ySwM_117.3382 Anthoceros agrestis HOM05D006844 ORTHO05D008504 2.3e-11 74.3 59 59.3
AT3G46610 Arabidopsis thaliana HOM05D006844 ORTHO05D008504 2.3e-11 74.3 43 74.4
GSVIVG01003980001 Vitis vinifera HOM05D006844 ORTHO05D008504 1.9e-10 71.2 59 57.6
Hma1.2p1_1484F.1_g286480 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 1.4e-08 65.1 67 50.7
Hma1.2p1_1484F.1_g286470 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 8.9e-08 62.4 63 55.6
Hma1.2p1_1484F.1_g286476 Hydrangea macrophylla HOM05D006844 ORTHO05D008504 8.9e-08 62.4 63 55.6
CDE09G1288 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 3.7e-06 57.0 54 50.0
CDE02G4692 Ceratophyllum demersum HOM05D006844 ORTHO05D008504 6.4e-06 56.2 54 50.0


User provided reference genes

Program Settings