Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 3.9e-268 927.5 463 100.0
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 9.3e-230 800.0 524 80.2
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 8.6e-167 590.9 469 68.7
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 8.9e-148 527.7 465 62.2
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 2.2e-122 443.4 352 60.5
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 3.0e-119 433.0 362 58.6
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 8.1e-117 424.9 366 58.7
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 1.4e-116 424.1 349 59.6
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 1.4e-116 424.1 363 59.0
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 1.4e-116 424.1 343 57.7
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 5.3e-116 422.2 442 51.1
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 6.9e-116 421.8 457 49.2
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 1.5e-115 420.6 336 60.4
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.0e-114 417.9 454 50.9
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.7e-114 417.2 371 54.7
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 2.9e-114 416.4 351 57.3
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.8e-114 416.0 346 55.8
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 6.5e-114 415.2 357 57.4
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 8.4e-114 414.8 340 56.8
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 2.5e-113 413.3 347 58.2
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 4.2e-113 412.5 346 55.8
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 5.5e-113 412.1 383 55.9
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.2e-112 411.0 351 58.1
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.2e-112 411.0 382 55.2
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 4.6e-112 409.1 347 57.6
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 7.9e-112 408.3 355 53.8
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 2.3e-111 406.8 333 59.2
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 2.3e-111 406.8 360 55.6
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 3.0e-111 406.4 363 55.9
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.1e-110 404.4 343 58.0
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 1.9e-110 403.7 364 54.4
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.7e-110 402.1 348 57.8
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 5.7e-110 402.1 457 48.6
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 5.7e-110 402.1 306 59.5
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 9.6e-110 401.4 357 54.6
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 9.6e-110 401.4 440 50.2
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.6e-109 400.6 400 51.8
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 2.1e-109 400.2 351 55.6
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 2.1e-109 400.2 373 53.4
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 2.8e-109 399.8 351 55.3
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.7e-109 399.4 350 55.4
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 4.8e-109 399.1 335 56.4
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 1.4e-108 397.5 433 49.0
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 2.4e-108 396.7 355 55.2
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 3.1e-108 396.4 355 58.0
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 4.1e-108 396.0 386 53.6
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 5.3e-108 395.6 341 55.1
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.2e-107 394.4 450 48.7
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.6e-107 393.3 337 56.7
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 3.4e-107 392.9 336 54.5
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 4.5e-107 392.5 406 51.0
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 5.9e-107 392.1 362 53.3
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 7.6e-107 391.7 314 58.0
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.3e-106 391.0 374 53.7
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 1.3e-106 391.0 350 56.3
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.7e-106 390.6 392 52.0
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 3.8e-106 389.4 469 43.9
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 3.8e-106 389.4 370 54.1
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.8e-106 389.4 370 55.1
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 5.0e-106 389.0 358 53.9
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 6.5e-106 388.7 380 51.8
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 6.5e-106 388.7 346 53.5
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 8.5e-106 388.3 308 58.4
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 1.9e-105 387.1 430 48.1
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 3.2e-105 386.3 391 51.9
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 4.2e-105 386.0 353 53.5
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 7.2e-105 385.2 471 45.0
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 7.2e-105 385.2 353 54.1
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.6e-104 382.9 426 47.7
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 4.6e-104 382.5 452 46.2
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 7.9e-104 381.7 356 53.1
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.3e-103 380.9 355 53.0
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 2.3e-103 380.2 343 54.5
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 3.9e-103 379.4 361 54.3
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 5.1e-103 379.0 418 46.4
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 6.7e-103 378.6 361 52.4
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 8.7e-103 378.3 354 53.1
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 3.3e-102 376.3 464 45.0
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 4.3e-102 375.9 338 53.3
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 2.8e-101 373.2 360 51.7
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 4.1e-100 369.4 357 51.0
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.0e-99 367.1 349 52.7
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.4e-99 366.3 364 53.0
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 5.9e-99 365.5 363 50.4
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 5.9e-99 365.5 316 54.7
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 7.7e-99 365.2 354 52.3
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 1.0e-98 364.8 325 55.7
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 1.7e-98 364.0 357 50.4
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 9.4e-97 358.2 366 49.5
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 9.4e-97 358.2 374 51.1
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.6e-96 357.5 397 47.4
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 2.7e-96 356.7 437 46.9
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.7e-96 356.7 352 50.9
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.6e-96 356.3 473 42.7
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 6.1e-96 355.5 356 50.8
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 7.9e-96 355.1 367 49.3
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.4e-95 354.4 450 46.2
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.4e-95 354.4 352 50.6
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 2.3e-95 353.6 304 55.9
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.1e-94 351.3 427 45.9
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 1.5e-94 350.9 339 52.8
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.2e-93 347.1 349 49.9
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 2.4e-92 343.6 346 50.0
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 5.3e-92 342.4 257 62.6
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 5.3e-92 342.4 349 49.3
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 1.3e-90 337.8 351 50.1
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 2.2e-90 337.0 354 49.2
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 3.2e-89 333.2 357 49.3
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 3.2e-89 333.2 247 63.6
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 3.2e-89 333.2 346 48.8
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 7.2e-89 332.0 376 48.4
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 7.2e-89 332.0 365 47.7
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 9.4e-89 331.6 309 52.4
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.2e-88 331.3 386 47.9
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.2e-88 331.3 358 47.2
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 6.1e-88 328.9 379 47.8
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 7.9e-88 328.6 358 46.9
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.3e-87 327.0 438 43.6
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.3e-87 327.0 389 45.2
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 6.7e-87 325.5 471 41.2
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 6.7e-87 325.5 358 46.9
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.1e-86 324.7 358 46.4
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 1.5e-86 324.3 307 48.9
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.2e-85 320.5 354 47.5
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 1.4e-84 317.8 281 53.7
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.8e-84 317.4 373 45.8
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 5.3e-84 315.8 386 44.3
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 9.1e-84 315.1 371 45.6
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 2.0e-83 313.9 364 47.3
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 9.4e-81 305.1 424 40.6
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.6e-80 304.3 352 46.0
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.0e-79 301.6 452 40.7
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.0e-79 301.6 271 54.6
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 3.3e-78 296.6 428 41.1
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 5.7e-78 295.8 441 41.0
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 2.8e-77 293.5 428 41.1
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 4.8e-77 292.7 329 43.8
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 4.5e-75 286.2 313 44.7
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.3e-74 284.6 329 43.2
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 6.5e-74 282.3 220 64.5
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 3.6e-72 276.6 339 44.0
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.9e-65 254.2 323 41.2
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 4.2e-65 253.1 321 41.4
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.2e-64 251.5 330 40.6
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.0e-63 248.4 323 40.2
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 5.2e-63 246.1 323 40.2
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 6.8e-63 245.7 271 46.9
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 1.4e-60 238.0 291 42.3
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.0e-58 231.9 230 50.0
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 1.5e-57 228.0 296 41.6
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.2e-56 224.9 216 48.6
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 1.0e-55 221.9 277 39.0
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 3.0e-55 220.3 266 39.1
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 4.0e-55 219.9 265 37.4
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 1.3e-53 214.9 283 36.7
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 2.9e-53 213.8 321 38.6
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.1e-48 197.6 288 35.8
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.1e-48 197.6 288 35.8
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.0e-47 195.3 213 43.2
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.8e-40 170.6 158 50.0
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.0e-39 166.8 134 52.2
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 6.8e-39 166.0 137 60.6
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.6e-35 153.3 137 54.7
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.5e-33 148.3 118 61.0
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 4.3e-33 146.7 184 42.4
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 7.6e-30 136.0 165 39.4
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.4e-28 131.0 81 65.4
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.0e-26 125.6 244 32.8
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.7e-26 124.8 115 53.9
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 2.1e-24 117.9 89 53.9
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.6e-16 91.7 67 56.7
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.1e-15 89.0 83 50.6
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.1e-11 74.7 99 42.4
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 1.8e-10 71.6 74 47.3
CBR_g4192 Chara braunii HOM05D000019 ORTHO05D022303 1.3e-08 65.5 128 32.0
Cre03.g201150 Chlamydomonas reinhardtii HOM05D000861 ORTHO05D004749 3.4e-06 57.4 101 29.7


User provided reference genes

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