Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.4e-130 467.6 227 100.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.6e-120 433.7 227 91.6
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 2.0e-100 369.4 228 78.9
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.1e-90 337.0 223 73.5
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.0e-80 303.9 229 65.1
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.1e-79 300.4 229 64.2
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 2.5e-79 299.3 226 64.6
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.3e-79 298.9 227 62.1
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 7.4e-79 297.7 226 63.7
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 7.4e-79 297.7 226 64.2
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.6e-79 297.4 230 63.5
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 9.6e-79 297.4 225 64.9
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 6.2e-78 294.7 226 63.3
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 8.1e-78 294.3 223 63.2
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.1e-77 293.9 228 60.5
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.4e-77 293.5 228 61.0
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.4e-77 293.5 228 60.5
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 1.4e-77 293.5 226 60.6
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.4e-77 292.7 226 61.5
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 4.0e-77 292.0 227 61.2
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 6.9e-77 291.2 227 61.2
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 9.0e-77 290.8 228 61.4
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 9.0e-77 290.8 226 61.1
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.2e-76 290.4 228 59.6
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.5e-76 290.0 223 61.9
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.0e-76 289.7 225 61.3
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.4e-76 288.9 224 63.4
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 4.5e-76 288.5 225 62.2
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.5e-76 288.5 227 62.6
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 7.6e-76 287.7 220 62.3
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.7e-75 286.6 222 61.3
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.7e-75 286.6 226 60.2
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 2.2e-75 286.2 226 60.2
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 3.8e-75 285.4 226 62.4
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 4.9e-75 285.0 228 58.3
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 6.5e-75 284.6 226 60.6
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 8.4e-75 284.3 226 59.3
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.9e-74 283.1 226 61.5
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.9e-74 283.1 226 60.6
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.5e-74 282.7 222 60.8
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 2.5e-74 282.7 225 59.1
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.2e-74 282.3 226 59.7
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 7.1e-74 281.2 226 60.6
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 9.3e-74 280.8 228 59.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.5e-73 278.9 230 60.0
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 3.9e-72 275.4 217 59.0
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 3.9e-72 275.4 226 60.2
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 3.9e-72 275.4 226 58.0
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 6.7e-72 274.6 225 59.1
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 3.3e-71 272.3 229 61.1
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 7.4e-71 271.2 226 58.0
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 1.3e-70 270.4 229 60.3
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 8.2e-70 267.7 229 59.0
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 1.4e-69 266.9 226 59.3
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.8e-69 266.5 228 57.0
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.4e-69 266.2 229 59.0
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.1e-69 265.8 226 59.3
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 9.0e-69 264.2 229 59.0
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-68 263.8 229 59.0
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 2.0e-68 263.1 229 59.8
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 3.4e-68 262.3 222 56.3
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 3.4e-68 262.3 225 56.9
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 4.5e-68 261.9 228 55.7
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 5.8e-68 261.5 224 55.8
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 5.8e-68 261.5 224 51.8
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 7.6e-68 261.2 224 56.2
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.2e-67 259.6 226 54.4
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 2.9e-67 259.2 225 56.0
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 5.0e-67 258.5 226 55.3
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.5e-66 256.1 226 54.9
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 3.2e-66 255.8 224 54.9
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 3.2e-66 255.8 224 54.5
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 3.2e-66 255.8 224 54.5
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 3.2e-66 255.8 224 54.5
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 7.1e-66 254.6 224 54.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 4.6e-65 251.9 224 53.6
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 7.9e-65 251.1 224 53.1
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-64 250.8 223 56.1
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.8e-64 250.0 185 64.3
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.3e-64 249.6 226 52.7
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 5.1e-64 248.4 224 53.1
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.9e-63 246.5 226 53.5
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 1.3e-62 243.8 218 53.2
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.7e-62 242.3 211 53.6
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 4.8e-62 241.9 224 50.4
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 4.8e-62 241.9 226 54.0
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 2.4e-61 239.6 225 52.9
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 6.9e-61 238.0 226 52.2
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.5e-60 235.3 207 53.6
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.9e-59 232.6 226 50.4
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 5.0e-59 231.9 224 50.9
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 8.5e-59 231.1 224 50.9
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 1.4e-58 230.3 202 54.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.7e-57 226.1 222 54.5
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.0e-56 224.2 220 53.2
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 2.2e-54 216.5 144 70.1
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 4.8e-54 215.3 223 47.1
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.0e-52 209.9 222 50.0
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 3.4e-52 209.1 247 44.1
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 1.7e-51 206.8 236 45.8
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 5.0e-51 205.3 216 48.6
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 6.5e-51 204.9 237 45.1
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.9e-50 203.4 236 44.9
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.7e-49 199.5 229 45.0
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.0e-47 193.4 238 42.9
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 3.7e-46 189.1 224 44.2
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 7.0e-45 184.9 244 41.8
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 2.0e-44 183.3 231 40.7
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 4.5e-44 182.2 223 41.7
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.9e-44 181.8 249 40.6
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.9e-42 176.8 250 41.2
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 7.2e-42 174.9 263 38.4
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.1e-41 173.3 227 40.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.4e-40 170.6 233 40.8
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 2.3e-40 169.9 226 41.2
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.0e-40 169.5 192 46.9
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.0e-40 169.5 228 40.4
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.0e-40 169.1 226 40.7
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 6.7e-40 168.3 258 35.3
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-39 164.9 251 37.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.3e-38 164.1 258 37.2
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 4.8e-38 162.2 237 38.0
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-37 161.0 224 42.4
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.4e-37 159.8 261 36.0
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.1e-37 159.5 228 39.0
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 4.1e-37 159.1 170 45.3
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 4.1e-37 159.1 170 45.3
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 7.0e-37 158.3 215 40.9
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.6e-36 156.4 261 36.0
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.7e-35 153.7 229 42.4
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.7e-35 153.7 229 42.4
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 8.5e-35 151.4 352 30.7
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 9.4e-34 147.9 230 36.5
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.2e-33 147.5 224 40.2
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.2e-33 147.5 149 49.7
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.6e-33 147.1 219 37.0
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 2.1e-33 146.7 203 37.9
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.1e-33 145.2 84 85.7
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 6.1e-33 145.2 136 49.3
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.4e-32 144.1 316 30.7
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 5.2e-32 142.1 152 46.7
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.8e-32 141.7 320 30.3
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-31 141.0 317 30.0
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.3e-30 137.5 148 41.9
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.4e-29 134.0 227 33.9
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 3.1e-29 132.9 255 33.3
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.0e-29 131.7 216 33.8
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 7.7e-28 128.3 207 33.8
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.5e-26 123.2 125 52.0
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.2e-26 122.5 139 43.9
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.2e-26 121.7 223 30.9
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.2e-25 120.9 139 43.9
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 2.7e-25 119.8 149 43.0
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 6.1e-25 118.6 141 42.6
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.4e-21 107.5 224 34.8
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 5.4e-21 105.5 103 48.5
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 4.5e-20 102.4 112 47.3
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 5.9e-20 102.1 107 44.9
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 3.8e-19 99.4 160 31.9
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.7e-14 84.0 95 44.2
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.9e-12 75.5 154 33.1
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 7.8e-12 75.1 195 29.2
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-10 70.5 160 31.2
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 6.2e-09 65.5 61 47.5
Phvul.009G037600 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 3.4e-07 59.7 211 26.5
VMungo1309G1057 Vigna mungo HOM05D001292 ORTHO05D001202 3.4e-07 59.7 211 26.5
MSTRG.24428 Avicennia marina HOM05D001292 ORTHO05D001202 9.8e-07 58.2 255 25.5
Oeu041818.1 Olea europaea HOM05D001292 ORTHO05D001202 9.8e-07 58.2 204 28.9
PGR031G1992 Punica granatum HOM05D001292 ORTHO05D001202 6.4e-06 55.5 255 23.1
ECA234G2749 Erigeron canadensis HOM05D001292 ORTHO05D001202 8.3e-06 55.1 197 22.3


User provided reference genes

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