Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.4e-133 478.8 235 100.0
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.3e-83 313.5 236 66.5
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.3e-73 280.4 234 61.1
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 4.5e-63 245.4 237 51.5
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.7e-62 243.4 132 90.9
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.1e-60 235.0 232 51.7
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.3e-59 233.0 234 51.7
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.5e-58 230.3 241 49.8
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.5e-58 230.3 234 50.4
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.7e-57 226.9 239 47.7
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.7e-57 226.9 235 48.5
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 2.8e-57 226.1 221 50.7
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 3.7e-57 225.7 218 48.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 3.7e-57 225.7 237 48.5
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 4.8e-57 225.3 237 48.5
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 6.3e-57 224.9 240 46.2
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.3e-57 224.9 241 47.3
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.1e-56 224.2 231 49.8
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.4e-56 223.8 239 47.7
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.8e-56 223.4 240 46.7
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.4e-56 223.0 241 46.9
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 2.4e-56 223.0 240 46.2
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 5.3e-56 221.9 241 47.3
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 6.9e-56 221.5 240 47.9
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 6.9e-56 221.5 221 50.2
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 9.1e-56 221.1 213 51.2
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 9.1e-56 221.1 245 44.9
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.2e-55 220.7 239 46.9
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 3.4e-55 219.2 230 47.8
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 4.5e-55 218.8 221 50.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.0e-54 217.6 231 48.5
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.3e-54 217.2 241 46.1
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.9e-54 216.1 241 46.9
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.9e-54 216.1 222 46.8
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.0e-54 215.3 231 46.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 8.5e-54 214.5 230 47.0
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 8.5e-54 214.5 241 44.8
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 8.5e-54 214.5 239 47.7
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 8.5e-54 214.5 241 46.1
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.9e-53 213.4 230 47.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 2.5e-53 213.0 221 48.9
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.5e-53 213.0 240 45.8
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.2e-53 212.6 230 45.2
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 9.4e-53 211.1 230 44.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.2e-52 210.7 230 48.3
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.1e-52 209.9 230 46.5
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.7e-52 209.5 225 45.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 4.7e-52 208.8 237 45.6
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 4.7e-52 208.8 219 47.0
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 6.1e-52 208.4 230 43.9
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 6.1e-52 208.4 241 45.2
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.1e-52 208.4 235 46.4
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-51 207.2 244 45.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.4e-51 207.2 201 50.2
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.8e-51 206.8 240 48.3
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.8e-51 206.8 232 46.6
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 2.3e-51 206.5 241 46.1
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 3.9e-51 205.7 237 44.7
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 5.1e-51 205.3 232 45.7
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 8.8e-51 204.5 236 44.9
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-50 203.4 245 43.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-50 203.4 245 43.3
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.0e-50 203.4 245 44.1
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 2.0e-50 203.4 238 45.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 5.7e-50 201.8 218 45.4
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 9.7e-50 201.1 240 44.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.3e-49 200.7 228 44.3
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.7e-49 200.3 231 47.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.2e-49 199.9 227 45.8
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.8e-49 199.5 231 42.9
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 2.8e-49 199.5 223 45.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.3e-49 198.4 239 43.5
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.4e-48 197.2 241 41.9
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.8e-48 196.8 230 45.2
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.8e-48 196.8 200 49.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.8e-48 196.8 216 44.9
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 3.1e-48 196.1 218 44.5
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 4.1e-48 195.7 230 46.1
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.0e-48 194.9 232 43.5
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.1e-48 194.5 232 44.8
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-47 194.1 230 44.3
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.6e-47 193.7 222 44.6
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.0e-47 193.4 232 44.4
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.3e-46 190.7 230 45.2
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.7e-46 190.3 225 44.4
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.9e-46 189.5 228 43.0
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.8e-46 189.1 233 42.9
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.5e-46 188.0 233 42.9
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.5e-46 188.0 233 42.9
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-45 186.8 233 42.9
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-45 186.8 233 42.5
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 4.2e-45 185.7 236 43.2
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 9.4e-45 184.5 232 42.2
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 9.4e-45 184.5 230 43.0
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 9.4e-45 184.5 229 41.0
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.6e-44 183.7 215 44.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 2.1e-44 183.3 215 42.8
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 4.7e-44 182.2 232 40.9
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 8.0e-44 181.4 214 43.0
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.0e-43 181.0 229 40.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.0e-43 181.0 242 40.9
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.3e-43 179.9 230 40.4
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 6.7e-43 178.3 196 45.4
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.8e-43 177.9 233 40.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.5e-42 177.2 232 42.7
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.5e-42 177.2 232 42.7
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.6e-42 176.4 227 44.5
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 5.7e-42 175.3 232 41.8
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 5.7e-42 175.3 232 42.2
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 5.7e-42 175.3 232 41.8
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 7.5e-42 174.9 232 41.4
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.3e-41 174.1 233 39.5
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.7e-41 173.7 234 43.6
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.7e-41 173.7 235 42.1
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.2e-41 173.3 204 41.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.8e-41 172.9 236 42.8
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 4.8e-41 172.2 233 42.5
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 6.3e-41 171.8 212 38.2
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.4e-40 170.6 234 42.3
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.8e-40 170.2 212 38.7
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 7.0e-40 168.3 174 47.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-39 167.5 232 40.1
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.7e-39 166.4 236 41.9
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 3.5e-39 166.0 231 42.0
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 5.9e-39 165.2 154 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 2.2e-38 163.3 216 37.0
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-38 163.3 213 42.3
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.8e-38 162.5 233 42.1
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 3.8e-38 162.5 227 36.6
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.1e-37 161.0 212 42.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.5e-37 159.8 232 41.4
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.5e-37 159.8 210 40.5
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 3.2e-37 159.5 195 41.0
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 4.2e-37 159.1 230 41.3
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 5.5e-37 158.7 232 41.8
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.2e-36 157.5 147 49.0
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.0e-35 154.5 154 47.4
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 2.6e-34 149.8 216 35.2
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.6e-34 149.8 151 47.0
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 9.8e-34 147.9 216 32.4
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.3e-33 147.5 218 37.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.8e-33 146.4 166 42.8
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.8e-33 145.6 212 37.7
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 6.3e-33 145.2 200 40.5
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 8.3e-33 144.8 212 37.7
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 8.3e-33 144.8 152 42.8
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.4e-32 144.1 231 40.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.4e-32 144.1 231 40.3
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 9.1e-32 141.4 182 42.3
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.3e-30 137.5 178 41.6
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 3.8e-30 136.0 187 35.8
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 5.0e-30 135.6 217 33.6
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.6e-28 130.6 218 34.4
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.6e-28 129.4 208 38.0
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.0e-28 128.3 142 45.8
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.6e-26 123.2 110 51.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 5.7e-26 122.1 137 45.3
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.7e-25 120.6 233 30.5
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 4.5e-23 112.5 102 52.0
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.8e-22 109.4 122 42.6
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.0e-22 109.0 165 38.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 8.9e-19 98.2 136 42.6
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-18 97.8 146 40.4
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.5e-18 95.1 96 42.7
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 5.4e-16 89.0 79 53.2
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-15 87.8 91 45.1
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.8e-15 85.1 91 44.0
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.0e-14 84.7 76 47.4
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.0e-14 83.2 107 41.1
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.1e-13 81.3 101 39.6
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-13 80.9 98 40.8
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 5.6e-13 79.0 79 44.3
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-12 77.8 213 26.3
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 4.0e-11 72.8 84 39.3
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.2e-10 71.2 103 36.9
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 9.8e-10 68.2 47 59.6
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 2.9e-09 66.6 152 27.6
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 8.3e-09 65.1 92 42.4


User provided reference genes

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