Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 0.0e+00 1716.4 845 100.0
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 0.0e+00 1333.9 716 90.8
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 5.5e-305 1050.8 849 65.4
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.4e-263 913.3 854 58.2
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.9e-236 823.2 876 53.0
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 3.3e-225 785.8 857 51.5
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 8.2e-224 781.2 861 50.8
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 2.4e-223 779.6 861 50.6
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 5.3e-223 778.5 874 51.3
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.5e-222 775.4 872 50.7
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 2.9e-221 772.7 864 49.4
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 8.5e-221 771.2 864 49.5
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.5e-220 769.6 864 49.7
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 4.6e-219 765.4 868 48.8
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 1.5e-217 760.4 867 49.4
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.7e-216 755.7 878 48.9
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 6.3e-216 755.0 874 50.2
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 3.1e-215 752.7 863 49.2
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 6.9e-215 751.5 868 49.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 5.9e-214 748.4 878 49.0
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.0e-213 747.7 900 47.4
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.2e-213 746.5 878 48.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 2.2e-213 746.5 870 49.2
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 8.5e-213 744.6 892 48.0
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.2e-212 742.7 865 49.2
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 7.2e-212 741.5 867 48.2
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 9.4e-212 741.1 870 48.4
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.8e-210 736.9 869 49.0
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 1.1e-207 727.6 856 47.0
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.4e-207 727.2 885 47.9
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.0e-207 724.9 893 47.8
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 7.0e-207 724.9 869 47.9
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 9.1e-207 724.5 878 47.6
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.2e-205 719.9 850 48.0
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 1.4e-204 717.2 870 47.2
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 4.2e-204 715.7 848 48.3
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 2.1e-203 713.4 875 48.0
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 6.1e-203 711.8 855 47.3
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 8.0e-203 711.4 890 45.7
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.1e-201 707.6 875 47.9
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 1.1e-201 707.6 856 46.4
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.6e-201 706.4 857 46.7
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.7e-200 702.6 890 45.4
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.5e-198 696.0 890 44.8
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 7.7e-198 694.9 876 46.9
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 1.3e-197 694.1 900 47.1
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 8.5e-197 691.4 863 46.9
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 8.5e-197 691.4 863 46.9
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 4.2e-196 689.1 852 46.4
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 9.4e-196 688.0 848 46.9
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.7e-195 686.4 863 46.5
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 4.7e-195 685.6 872 46.6
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.8e-194 683.7 910 44.4
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 4.0e-194 682.6 868 45.5
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.5e-193 680.6 876 46.0
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 5.7e-193 678.7 891 45.7
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 2.8e-192 676.4 847 45.6
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 3.7e-192 676.0 872 46.2
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.1e-191 674.5 857 46.1
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 3.1e-191 672.9 853 45.7
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.6e-190 670.6 881 46.3
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.0e-190 670.2 843 45.1
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 2.0e-190 670.2 897 44.8
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 4.5e-190 669.1 841 45.7
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 7.7e-190 668.3 841 46.7
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 7.7e-190 668.3 841 46.7
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 2.5e-188 663.3 859 46.2
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 1.6e-187 660.6 868 45.9
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.2e-185 654.4 896 45.9
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.5e-185 654.1 852 43.9
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.6e-185 653.3 854 44.7
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 3.4e-185 652.9 727 48.6
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 9.8e-185 651.4 852 45.4
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 9.8e-185 651.4 893 46.1
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.7e-184 650.6 966 41.9
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.2e-184 650.2 867 44.3
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 6.3e-184 648.7 889 45.2
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 1.4e-183 647.5 856 44.3
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 4.1e-183 646.0 882 45.0
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 3.5e-182 642.9 854 44.3
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.0e-181 641.3 867 43.8
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.7e-181 640.6 863 43.1
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 2.1e-179 633.6 886 44.8
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.8e-178 630.6 845 43.8
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 8.9e-178 628.2 901 43.6
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 2.6e-177 626.7 747 47.1
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 8.3e-176 621.7 864 43.2
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.2e-174 617.8 845 42.7
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 4.5e-174 615.9 860 42.9
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 4.5e-174 615.9 860 42.9
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 1.3e-173 614.4 849 43.3
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.1e-171 607.1 848 44.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 2.8e-171 606.7 847 43.0
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 2.3e-170 603.6 909 43.1
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 4.9e-168 595.9 816 45.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.5e-164 584.3 803 42.7
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 1.9e-164 583.9 894 40.4
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.6e-164 582.4 743 45.4
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 4.4e-161 572.8 777 42.1
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 2.2e-160 570.5 863 41.1
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 3.2e-159 566.6 627 51.2
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.5e-156 557.0 613 49.6
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 9.9e-153 545.0 863 41.0
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 3.7e-152 543.1 868 42.5
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.5e-150 536.6 609 50.1
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.0e-145 520.8 693 42.3
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 2.1e-139 500.7 596 47.7
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.7e-134 483.8 604 46.4
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 8.7e-133 478.8 684 41.4
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.9e-127 461.1 576 46.7
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 6.0e-126 456.1 786 38.2
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 4.8e-123 446.4 557 47.9
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.2e-118 431.8 668 40.7
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.1e-116 425.2 865 36.5
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 9.7e-108 395.6 503 46.3
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 1.6e-94 351.7 663 35.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 2.1e-94 351.3 563 40.9
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.1e-94 351.3 355 51.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 7.4e-92 342.8 550 38.0
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.6e-89 334.3 633 35.7
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.7e-88 331.6 484 40.9
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 6.5e-88 329.7 977 29.0
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 1.1e-82 312.4 1073 27.9
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.4e-82 312.0 548 38.1
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 5.0e-80 303.5 1103 25.6
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 8.8e-77 292.7 462 40.0
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.5e-76 292.0 385 45.7
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 8.3e-75 286.2 511 34.1
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-62 245.0 285 46.3
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.7e-60 236.9 217 59.0
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.1e-58 232.6 195 65.6
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 6.8e-53 213.4 199 58.3
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.7e-51 208.8 190 62.1
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 2.5e-47 194.9 180 57.8
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.8e-46 191.4 289 41.5
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.3e-45 188.3 169 62.7
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 5.2e-45 187.2 329 38.0
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.0e-44 185.3 216 50.0
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 3.4e-44 184.5 173 58.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 2.9e-43 181.4 179 53.6
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 4.3e-39 167.5 247 41.3
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.0e-36 158.7 161 57.1
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.3e-35 156.0 125 64.8
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 2.2e-35 155.2 114 62.3
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 7.8e-33 146.7 164 54.9
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 7.8e-33 146.7 164 53.7
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 9.6e-31 139.8 116 60.3
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 6.2e-30 137.1 116 58.6
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 2.4e-29 135.2 282 34.0
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 5.8e-28 130.6 103 56.3
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.7e-27 129.0 96 69.8
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.9e-27 127.5 96 68.8
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.9e-26 125.6 127 56.7
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 3.2e-26 124.8 246 29.3
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 3.2e-26 124.8 153 52.9
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 3.2e-26 124.8 140 52.9
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.2e-26 124.8 253 32.4
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 2.7e-25 121.7 140 54.3
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.5e-25 121.3 104 63.5
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 1.0e-24 119.8 80 73.8
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.4e-21 109.4 189 34.9
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 4.0e-21 107.8 103 52.4
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 3.8e-19 101.3 298 23.8
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 4.2e-18 97.8 462 24.0
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 1.6e-17 95.9 121 39.7
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.7e-17 95.1 203 33.5
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 8.7e-16 90.1 135 43.7
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 7.3e-15 87.0 157 35.7
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 2.8e-14 85.1 65 72.3
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 4.5e-12 77.8 90 54.4
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 4.5e-12 77.8 69 62.3
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 8.4e-11 73.6 62 67.7
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 5.5e-10 70.9 118 47.5
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 5.5e-10 70.9 237 28.3
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.7e-09 68.6 56 60.7
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 7.4e-07 60.5 141 27.0
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 6.2e-06 57.4 59 59.3
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 8.1e-06 57.0 89 38.2


User provided reference genes

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