Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1727.6 830 100.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1595.9 856 90.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1377.1 833 79.4
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 0.0e+00 1295.0 836 74.9
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1256.5 835 72.1
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1150.2 836 64.2
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1127.5 811 66.0
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1124.8 843 62.5
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1122.5 838 63.2
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1121.3 839 63.2
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1117.1 868 62.0
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1116.7 836 64.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1116.3 835 64.2
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 839 63.8
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1113.2 839 62.3
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1105.1 838 63.2
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1103.2 841 62.9
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1099.7 838 62.9
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1098.6 840 63.0
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1097.4 839 62.6
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 874 61.3
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 836 61.5
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1088.6 840 62.0
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1088.6 841 62.2
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 814 63.8
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1087.4 836 61.1
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1083.2 839 60.8
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 841 61.6
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1079.7 837 62.4
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1077.0 840 61.8
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1076.6 833 61.5
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 5.7e-312 1073.5 843 62.0
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 4.0e-311 1071.2 839 61.5
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 6.8e-311 1070.5 840 61.7
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 9.5e-310 1066.6 839 60.5
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 6.2e-309 1063.9 847 60.9
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 3.1e-308 1061.6 842 61.3
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 1.2e-307 1059.7 839 61.3
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 1.3e-306 1056.2 838 60.4
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 1.3e-306 1056.2 835 61.0
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 6.4e-306 1053.9 838 61.6
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 1.4e-305 1052.7 837 60.8
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.4e-305 1052.0 844 60.0
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 4.2e-305 1051.2 834 61.0
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 4.6e-304 1047.7 833 61.2
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.0e-304 1047.3 837 60.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 6.0e-304 1047.3 958 55.1
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 5.1e-303 1044.3 843 59.1
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 3.3e-302 1041.6 837 59.1
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 7.3e-302 1040.4 846 59.7
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 1.3e-301 1039.6 837 59.7
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 1.3e-301 1039.6 842 58.9
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 1.8e-300 1035.8 852 59.0
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 1.8e-300 1035.8 844 58.9
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 2.4e-300 1035.4 840 58.9
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 2.4e-300 1035.4 848 59.4
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 4.0e-300 1034.6 841 59.1
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 6.9e-300 1033.9 841 59.5
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 9.0e-300 1033.5 836 60.0
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 5.8e-299 1030.8 838 59.8
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 5.8e-299 1030.8 835 58.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 7.6e-299 1030.4 838 57.9
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 7.6e-299 1030.4 843 59.8
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 9.9e-299 1030.0 836 59.6
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 6.4e-298 1027.3 833 58.6
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 8.4e-298 1026.9 861 58.1
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 1.6e-296 1022.7 837 59.7
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.6e-296 1022.7 835 57.7
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.1e-296 1022.3 836 58.3
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 2.7e-296 1021.9 841 59.0
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 1.0e-295 1020.0 839 59.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 3.0e-295 1018.5 770 61.8
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 6.7e-295 1017.3 851 58.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 1.5e-294 1016.1 841 59.8
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 9.6e-294 1013.4 835 58.8
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 4.0e-292 1008.1 844 59.0
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 5.3e-292 1007.7 839 58.6
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 1.5e-291 1006.1 838 58.6
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 5.8e-291 1004.2 843 58.8
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 4.9e-290 1001.1 844 58.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 6.4e-290 1000.7 834 57.7
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 2.4e-289 998.8 873 57.2
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 4.2e-289 998.0 845 58.7
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 5.5e-289 997.7 845 58.6
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 2.1e-288 995.7 847 58.6
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 4.3e-286 988.0 837 56.8
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.6e-285 986.1 646 71.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 3.7e-285 984.9 834 58.2
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 4.8e-285 984.6 881 56.6
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 8.2e-285 983.8 833 58.6
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 1.8e-284 982.6 832 56.6
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 6.9e-284 980.7 858 57.2
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 2.2e-277 959.1 711 63.3
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 2.6e-275 952.2 808 57.9
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 1.7e-274 949.5 803 57.5
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 8.5e-274 947.2 759 60.3
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 3.2e-273 945.3 806 56.3
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 9.4e-273 943.7 737 59.6
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 1.1e-270 936.8 758 58.3
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 5.7e-270 934.5 762 58.1
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 6.9e-268 927.5 702 62.0
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 2.0e-267 926.0 763 57.7
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 2.6e-267 925.6 762 57.6
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 2.2e-266 922.5 758 57.4
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 2.9e-266 922.2 841 54.5
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.9e-266 922.2 760 57.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 2.9e-266 922.2 827 54.3
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 3.8e-266 921.8 841 55.8
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 4.2e-265 918.3 819 54.8
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.6e-264 916.4 760 57.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 2.3e-263 912.5 791 56.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 4.4e-262 908.3 760 57.0
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 1.3e-261 906.7 837 54.0
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 5.3e-260 901.4 760 56.7
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.7e-253 879.8 762 55.8
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.1e-252 877.1 741 57.2
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 5.3e-244 848.2 819 53.5
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 2.4e-236 822.8 787 51.8
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 4.1e-228 795.4 601 63.4
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 7.8e-227 791.2 847 46.9
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 3.2e-220 769.2 753 50.9
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 4.0e-215 752.3 780 49.1
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 1.2e-214 750.7 811 47.6
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 1.4e-212 743.8 839 44.2
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 6.0e-203 711.8 775 47.0
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.9e-197 692.2 610 56.4
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.2e-195 687.6 636 51.3
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 4.4e-190 669.1 759 46.5
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 2.5e-177 626.7 584 53.9
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 4.8e-176 622.5 629 50.9
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 5.3e-175 619.0 458 64.0
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 5.5e-172 609.0 418 67.9
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 4.6e-171 605.9 501 56.7
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 7.4e-169 598.6 468 60.0
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.0e-157 561.6 415 61.0
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 5.3e-151 539.3 653 45.9
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 6.5e-149 532.3 853 36.6
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 1.9e-140 504.2 412 57.0
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 6.3e-136 489.2 572 47.4
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 1.6e-123 448.0 409 54.0
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 4.4e-121 439.9 336 60.1
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 1.5e-116 424.9 438 50.9
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 1.0e-109 402.1 796 34.7
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 2.8e-99 367.5 388 49.0
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 5.2e-98 363.2 306 53.9
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 2.6e-97 360.9 306 56.2
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.7e-96 357.1 420 46.4
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 7.6e-89 332.8 255 61.2
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 3.3e-68 264.2 519 31.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 4.0e-66 257.3 780 26.9
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.0e-61 242.7 166 67.5
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 1.3e-61 242.3 228 53.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.6e-59 235.3 211 56.9
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 5.7e-52 210.3 167 56.9
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 3.8e-48 197.6 100 82.0
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.5e-33 149.1 155 45.8
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 5.0e-32 144.1 81 71.6
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 8.5e-24 116.7 86 61.6
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.5e-20 105.9 151 41.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 2.6e-20 105.1 99 50.5
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 1.3e-19 102.8 69 65.2
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 4.8e-19 100.9 96 54.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 6.3e-19 100.5 83 56.6
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 4.5e-17 94.4 123 46.3
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 1.3e-16 92.8 72 63.9
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 1.5e-15 89.4 84 50.0
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.5e-15 88.6 75 54.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.0e-12 79.0 96 44.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.6e-12 78.6 95 45.3
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 5.7e-12 77.4 38 81.6
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 7.5e-12 77.0 128 35.9
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.7e-11 75.9 37 83.8
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.2e-11 75.5 44 77.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 8.3e-11 73.6 89 43.8
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.0e-08 66.6 70 47.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 8.0e-06 57.0 31 67.7


User provided reference genes

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