Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 7.7e-172 607.1 307 100.0
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 6.0e-100 368.2 306 67.3
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 4.6e-92 342.0 306 61.8
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 4.3e-90 335.5 306 60.5
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 9.0e-88 327.8 306 60.1
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 4.8e-81 305.4 306 54.6
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 1.1e-80 304.3 306 54.6
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 9.0e-80 301.2 306 54.6
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 3.4e-79 299.3 306 53.3
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 3.4e-79 299.3 306 53.3
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 5.8e-79 298.5 306 52.9
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 8.4e-78 294.7 313 53.0
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 8.4e-78 294.7 306 52.6
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 1.2e-76 290.8 306 52.6
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 1.2e-76 290.8 295 53.9
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 1.6e-76 290.4 306 52.6
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 2.7e-76 289.7 306 52.6
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 2.7e-76 289.7 306 52.3
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 4.6e-76 288.9 306 52.3
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 1.3e-75 287.3 306 52.0
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.3e-75 287.3 306 53.6
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 1.8e-75 287.0 306 51.3
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 2.3e-75 286.6 297 53.2
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 1.1e-74 284.3 297 52.5
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 1.5e-74 283.9 306 51.6
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 1.9e-74 283.5 307 51.8
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.5e-74 283.1 297 52.2
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 2.5e-74 283.1 318 50.9
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.3e-74 282.7 297 52.5
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 7.4e-74 281.6 297 53.2
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 7.4e-74 281.6 297 52.5
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 1.3e-73 280.8 306 50.3
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 2.1e-73 280.0 306 50.3
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 3.7e-73 279.3 306 51.0
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 3.7e-73 279.3 306 51.0
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 4.8e-73 278.9 306 50.3
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 8.2e-73 278.1 297 50.5
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.1e-72 277.7 295 51.5
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.4e-72 276.6 306 48.7
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 3.1e-72 276.2 306 51.0
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 3.1e-72 276.2 306 51.0
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 5.3e-72 275.4 295 50.8
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 6.9e-72 275.0 297 50.2
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 9.0e-72 274.6 306 49.0
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 9.0e-72 274.6 306 49.3
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 1.5e-71 273.9 294 51.4
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.5e-71 273.9 307 50.5
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.0e-71 273.5 306 49.0
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 2.0e-71 273.5 306 50.3
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.6e-71 273.1 306 49.0
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.6e-71 273.1 306 49.0
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 3.4e-71 272.7 306 48.4
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 4.5e-71 272.3 306 50.3
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 4.5e-71 272.3 297 50.2
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 5.9e-71 271.9 306 49.3
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 7.6e-71 271.6 297 50.5
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 7.6e-71 271.6 289 51.2
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 1.0e-70 271.2 289 52.6
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.3e-70 270.8 307 49.2
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 1.7e-70 270.4 303 49.8
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 1.7e-70 270.4 305 50.2
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 2.2e-70 270.0 306 48.0
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 6.5e-70 268.5 306 48.0
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 8.5e-70 268.1 306 48.0
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 2.5e-69 266.5 306 47.4
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 2.5e-69 266.5 306 47.4
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.5e-69 266.5 307 49.8
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 3.2e-69 266.2 306 47.7
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 4.2e-69 265.8 295 49.2
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 1.2e-68 264.2 295 48.8
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 1.6e-68 263.8 295 48.8
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.6e-68 263.8 307 49.5
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.6e-68 262.3 306 47.7
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 1.0e-67 261.2 318 48.1
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 1.8e-67 260.4 327 46.5
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 2.3e-67 260.0 295 49.8
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.0e-67 259.6 284 50.7
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 5.1e-67 258.8 295 49.8
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 8.7e-67 258.1 297 48.5
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 1.5e-66 257.3 308 48.4
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 1.5e-66 257.3 306 48.0
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 2.5e-66 256.5 161 77.6
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 1.6e-65 253.8 297 48.1
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.1e-64 251.1 329 44.7
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.1e-64 251.1 329 44.7
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 9.1e-64 248.1 293 47.1
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 1.5e-63 247.3 348 44.0
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.0e-62 244.6 293 47.1
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.7e-62 243.8 167 71.3
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.9e-62 243.0 293 46.8
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.1e-61 241.1 306 45.8
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 1.2e-60 237.7 309 44.7
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 4.6e-60 235.7 161 70.8
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 3.0e-59 233.0 294 44.9
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 6.7e-59 231.9 315 43.8
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 6.7e-59 231.9 258 50.4
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.2e-57 226.9 324 42.3
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 4.8e-57 225.7 274 49.3
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 5.3e-56 222.2 292 43.2
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.5e-50 204.1 161 65.2
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 3.7e-49 199.5 290 43.4
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 1.4e-48 197.6 304 41.4
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 2.6e-47 193.4 258 43.4
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 4.5e-47 192.6 272 42.6
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 4.5e-47 192.6 272 42.6
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 2.9e-46 189.9 296 37.5
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 1.5e-45 187.6 254 44.5
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 2.3e-43 180.3 291 37.1
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 5.2e-43 179.1 141 63.8
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 2.4e-40 170.2 128 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 2.9e-38 163.3 291 33.7
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 5.2e-35 152.5 297 33.0
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 2.7e-31 140.2 90 73.3
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 1.7e-25 120.9 114 56.1
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 1.4e-24 117.9 72 73.6
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 1.3e-22 111.3 89 59.6
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 4.0e-19 99.8 55 81.8
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 4.0e-19 99.8 122 54.9
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.4e-16 91.3 64 70.3
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 9.2e-16 88.6 176 35.2
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 3.5e-15 86.7 65 70.8
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 3.6e-12 76.6 178 31.5
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 8.9e-11 72.0 159 33.3
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 4.6e-07 59.7 33 72.7


User provided reference genes

Program Settings