Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 5.6e-74 280.8 137 100.0
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 4.0e-72 274.6 137 97.8
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 4.0e-64 248.1 137 87.6
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 4.2e-53 211.5 140 75.0
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 4.2e-53 211.5 140 75.0
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 7.9e-52 207.2 137 73.7
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 5.1e-51 204.5 137 73.0
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.5e-50 203.0 138 73.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 1.5e-50 203.0 135 74.8
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.9e-50 202.6 137 73.7
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 4.3e-50 201.4 137 70.1
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 5.7e-50 201.1 139 71.2
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 5.7e-50 201.1 139 71.2
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 9.7e-50 200.3 137 73.0
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 9.7e-50 200.3 137 71.5
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.3e-49 199.9 137 73.0
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.3e-49 199.9 139 71.9
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 1.3e-49 199.9 138 70.3
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 1.6e-49 199.5 137 72.3
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 1.6e-49 199.5 137 72.3
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 2.2e-49 199.1 137 73.7
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.8e-49 198.7 134 71.6
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 2.8e-49 198.7 137 70.1
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 2.8e-49 198.7 140 71.4
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 3.7e-49 198.4 137 70.8
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 4.8e-49 198.0 135 72.6
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 8.2e-49 197.2 135 71.9
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.1e-48 196.8 137 71.5
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 1.4e-48 196.4 135 72.6
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 2.4e-48 195.7 134 70.9
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 3.1e-48 195.3 131 71.8
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 3.1e-48 195.3 137 68.6
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 4.1e-48 194.9 139 69.8
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 4.1e-48 194.9 137 73.0
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 4.1e-48 194.9 137 70.8
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 5.3e-48 194.5 137 71.5
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 6.9e-48 194.1 137 70.1
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 9.0e-48 193.7 141 70.2
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 1.2e-47 193.4 137 67.9
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 1.2e-47 193.4 139 71.2
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 1.2e-47 193.4 137 68.6
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 1.5e-47 193.0 137 65.7
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 1.5e-47 193.0 137 67.2
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 2.0e-47 192.6 135 71.9
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 2.0e-47 192.6 138 70.3
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 2.6e-47 192.2 137 67.2
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 2.6e-47 192.2 137 71.5
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 3.4e-47 191.8 139 68.3
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 3.4e-47 191.8 137 70.8
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 4.5e-47 191.4 137 69.3
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 5.9e-47 191.0 133 71.4
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 5.9e-47 191.0 139 68.3
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 5.9e-47 191.0 136 68.4
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 7.7e-47 190.7 137 70.8
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 7.7e-47 190.7 138 68.1
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 7.7e-47 190.7 137 70.8
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-46 190.3 133 70.7
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 1.0e-46 190.3 138 68.1
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 1.0e-46 190.3 138 68.1
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 1.0e-46 190.3 133 71.4
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 1.0e-46 190.3 138 68.8
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.0e-46 190.3 137 68.6
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.3e-46 189.9 137 67.9
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 1.3e-46 189.9 137 69.3
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 1.3e-46 189.9 137 69.3
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 1.7e-46 189.5 135 68.1
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 2.9e-46 188.7 138 68.8
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 6.5e-46 187.6 137 67.9
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 6.5e-46 187.6 137 67.2
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 6.5e-46 187.6 137 67.2
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 8.5e-46 187.2 137 67.9
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 8.5e-46 187.2 137 65.7
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 8.5e-46 187.2 137 69.3
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 1.4e-45 186.4 138 68.8
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 1.9e-45 186.0 137 68.6
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 1.9e-45 186.0 147 65.3
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.9e-45 186.0 137 65.7
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 2.5e-45 185.7 133 71.4
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 5.5e-45 184.5 93 89.2
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 9.4e-45 183.7 137 67.2
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 1.2e-44 183.3 138 68.1
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 1.2e-44 183.3 132 72.0
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 2.1e-44 182.6 135 67.4
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 6.1e-44 181.0 137 64.2
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 6.1e-44 181.0 139 66.9
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 7.9e-44 180.6 137 65.7
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 2.3e-43 179.1 137 65.7
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 6.7e-43 177.6 139 66.9
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 1.1e-42 176.8 144 63.2
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 2.0e-42 176.0 139 66.2
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 8.2e-41 170.6 120 67.5
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 2.4e-40 169.1 139 63.3
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 2.4e-40 169.1 136 62.5
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 4.1e-40 168.3 140 62.1
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 4.1e-40 168.3 140 62.1
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 4.1e-40 168.3 140 62.1
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 4.1e-40 168.3 140 62.1
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.2e-39 166.8 121 65.3
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 5.9e-39 164.5 114 64.9
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 5.9e-39 164.5 119 66.4
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 1.0e-38 163.7 131 62.6
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.3e-38 163.3 110 71.8
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 1.7e-38 162.9 116 68.1
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 2.2e-38 162.5 114 66.7
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 2.2e-38 162.5 133 63.2
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 3.8e-38 161.8 114 64.9
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 8.5e-38 160.6 113 68.1
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 8.5e-38 160.6 113 68.1
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 8.5e-38 160.6 113 68.1
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 1.1e-37 160.2 108 70.4
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 1.4e-37 159.8 110 70.9
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 2.5e-37 159.1 113 67.3
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 2.5e-37 159.1 113 67.3
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 2.5e-37 159.1 110 70.9
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 3.2e-37 158.7 108 69.4
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 4.2e-37 158.3 101 73.3
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 7.2e-37 157.5 130 59.2
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 7.2e-37 157.5 130 59.2
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 7.9e-36 154.1 113 68.1
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 3.0e-35 152.1 109 68.8
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 3.9e-35 151.8 98 66.3
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 9.7e-34 147.1 136 53.7
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 2.2e-33 146.0 132 55.3
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 2.2e-30 136.0 138 57.2
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 6.1e-28 127.9 119 61.3
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 1.0e-27 127.1 107 59.8
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 5.2e-27 124.8 78 73.1
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 1.6e-23 113.2 104 54.8
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 5.0e-22 108.2 115 47.8
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 3.2e-21 105.5 81 71.6
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 1.2e-20 103.6 72 63.9
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.8e-19 99.8 136 46.3
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 2.3e-19 99.4 74 70.3
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 4.0e-19 98.6 151 39.1
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 4.0e-19 98.6 56 73.2
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 4.4e-18 95.1 114 47.4
Aqoxy2G01813 Aquilegia oxysepala HOM05D005190 ORTHO05D006183 5.7e-18 94.7 74 67.6
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 6.3e-17 91.3 70 61.4
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 7.0e-16 87.8 78 59.0
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 3.5e-15 85.5 49 73.5
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 6.5e-14 81.3 89 52.8
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 1.2e-12 77.0 80 53.8
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 2.1e-12 76.3 100 41.0
Atru.chr4.92 Acer truncatum HOM05D005190 ORTHO05D006183 4.7e-12 75.1 56 66.1
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 8.8e-11 70.9 49 63.3
MELO3C033488.2 Cucumis melo HOM05D005190 ORTHO05D006183 2.8e-09 65.9 77 51.9
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 2.8e-09 65.9 81 43.2
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 6.3e-09 64.7 142 36.6


User provided reference genes

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