Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.9e-191 671.8 355 100.0
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.5e-160 568.5 355 87.6
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.1e-134 483.8 357 75.9
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.5e-115 420.2 338 69.8
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 3.4e-107 392.5 241 82.2
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 3.3e-102 375.9 242 78.9
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 7.4e-102 374.8 254 76.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 4.1e-100 369.0 243 77.0
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 5.3e-100 368.6 243 78.2
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.0e-98 364.4 249 76.7
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.3e-98 364.0 242 75.6
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.7e-98 363.6 357 60.2
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 2.9e-98 362.8 247 75.7
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 8.5e-98 361.3 243 76.5
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.4e-97 360.5 221 81.4
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.4e-97 360.5 227 79.7
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 7.2e-97 358.2 267 71.5
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 9.4e-97 357.8 226 79.6
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 9.4e-97 357.8 239 76.6
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 1.6e-96 357.1 229 78.6
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 3.6e-96 355.9 237 75.9
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.7e-96 355.5 243 76.1
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 4.7e-96 355.5 243 76.1
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 7.9e-96 354.8 226 79.6
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 7.9e-96 354.8 243 75.7
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.8e-95 353.6 239 75.3
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.8e-95 353.6 223 79.8
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.8e-95 353.6 223 79.8
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.0e-95 352.8 254 72.0
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 3.9e-95 352.4 242 74.8
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 3.9e-95 352.4 242 74.8
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 3.9e-95 352.4 238 75.6
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 3.9e-95 352.4 229 80.3
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 8.8e-95 351.3 327 61.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.6e-94 349.7 243 75.3
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 3.3e-94 349.4 261 71.3
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 5.7e-94 348.6 239 73.6
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 5.7e-94 348.6 223 78.5
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 7.4e-94 348.2 294 63.3
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 9.7e-94 347.8 237 75.9
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 1.3e-93 347.4 233 76.8
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.3e-93 347.4 232 77.6
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.7e-93 347.1 233 76.4
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.7e-93 347.1 211 82.9
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 3.7e-93 345.9 253 71.1
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 6.3e-93 345.1 232 75.9
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 8.2e-93 344.7 240 72.5
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.1e-92 344.4 241 71.8
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.8e-92 343.6 213 78.9
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.4e-92 343.2 242 72.7
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 2.4e-92 343.2 246 73.6
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 3.1e-92 342.8 330 59.7
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 4.1e-92 342.4 233 76.8
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 5.3e-92 342.0 249 71.9
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 5.3e-92 342.0 249 72.7
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 7.0e-92 341.7 233 73.0
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 9.1e-92 341.3 219 79.0
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.2e-91 340.9 249 72.3
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.2e-91 340.9 249 72.3
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.5e-91 340.5 353 55.0
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 2.0e-91 340.1 332 56.6
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.0e-91 340.1 295 63.4
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.6e-91 339.7 210 81.4
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 2.6e-91 339.7 260 68.5
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.5e-91 339.3 249 71.9
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 7.7e-91 338.2 229 75.5
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.0e-90 337.8 220 78.2
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.7e-90 337.0 217 77.0
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 3.8e-90 335.9 205 84.4
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 3.8e-90 335.9 206 84.0
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 3.8e-90 335.9 210 80.5
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 5.0e-90 335.5 259 67.2
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 6.5e-90 335.1 206 83.5
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 6.5e-90 335.1 352 56.8
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 6.5e-90 335.1 253 71.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 8.5e-90 334.7 205 84.4
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.5e-89 334.0 253 70.8
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.5e-89 334.0 206 83.0
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 2.5e-89 333.2 225 77.3
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.2e-89 332.8 219 78.1
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 4.2e-89 332.4 253 70.4
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 5.5e-89 332.0 206 83.0
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 5.5e-89 332.0 235 73.6
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 7.2e-89 331.6 208 78.8
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 9.4e-89 331.3 246 71.5
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.2e-88 330.9 243 70.8
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 2.1e-88 330.1 204 82.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 4.7e-88 328.9 272 65.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 4.7e-88 328.9 208 81.2
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 6.1e-88 328.6 210 80.5
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 8.0e-88 328.2 220 76.4
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 8.0e-88 328.2 206 78.6
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 1.0e-87 327.8 207 81.2
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 3.0e-87 326.2 206 78.6
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 6.7e-87 325.1 253 69.2
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 8.8e-87 324.7 233 74.2
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.3e-86 322.8 244 67.6
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 7.4e-86 321.6 207 80.2
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 2.8e-85 319.7 217 75.1
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 6.3e-85 318.5 325 56.6
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 2.0e-83 313.5 204 79.4
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 2.0e-83 313.5 189 82.0
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 5.9e-83 312.0 204 78.9
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 6.1e-80 302.0 165 90.3
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.3e-77 294.3 246 63.4
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.1e-76 291.2 212 70.8
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.3e-76 288.9 226 68.6
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 5.2e-71 272.3 214 64.0
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 8.6e-66 255.0 267 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 4.4e-62 242.7 183 63.4
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 5.7e-62 242.3 142 81.7
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.2e-60 236.5 185 60.5
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.9e-52 210.7 206 51.9
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 7.0e-52 208.8 165 60.0
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.1e-49 201.4 185 54.1
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 2.5e-49 200.3 208 48.6
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 2.2e-45 187.2 177 50.8
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.9e-44 184.1 133 75.2
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 4.3e-41 172.9 179 47.5
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-39 167.9 143 63.6
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 6.6e-34 149.1 158 55.1
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 6.6e-26 122.5 143 39.9
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 6.9e-23 112.5 65 84.6
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 3.2e-20 103.6 101 60.4
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 2.1e-16 90.9 64 73.4
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 8.1e-16 89.0 53 81.1
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 7.6e-06 55.8 134 27.6
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 1.0e-05 55.5 131 26.7
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.0e-05 55.5 134 25.4
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 1.0e-05 55.5 134 26.9


User provided reference genes

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