Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 0.0e+00 1753.0 949 100.0
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 0.0e+00 1567.7 940 91.4
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 0.0e+00 1269.6 955 73.8
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 0.0e+00 1182.2 952 68.5
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 0.0e+00 1112.1 954 68.0
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.1e-280 970.3 913 61.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 3.8e-230 802.4 885 55.1
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-210 736.1 926 52.6
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.4e-210 735.7 937 49.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 9.9e-210 734.6 926 52.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.3e-209 734.2 932 49.9
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.7e-209 732.6 913 51.3
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-208 731.1 926 52.1
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-208 730.7 955 50.5
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.9e-208 730.3 925 51.7
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.4e-208 729.9 921 52.7
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 5.4e-208 728.8 940 52.2
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 8.6e-206 721.5 939 50.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.5e-205 719.9 934 51.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.6e-204 717.2 930 50.0
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.4e-203 714.1 941 49.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.4e-203 713.4 942 48.6
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 8.9e-203 711.4 933 50.2
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 4.4e-202 709.1 944 48.8
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 4.9e-201 705.7 854 51.2
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-200 704.1 942 48.3
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.9e-200 703.7 937 50.2
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 7.1e-200 701.8 964 49.8
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 7.1e-200 701.8 933 50.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.1e-199 700.3 928 50.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.8e-196 689.9 932 49.5
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 6.2e-196 688.7 1010 46.0
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.1e-196 688.3 927 49.7
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 5.2e-195 685.6 945 49.1
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.2e-195 685.6 942 49.2
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.3e-193 681.0 926 48.7
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.4e-193 678.3 942 49.0
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.4e-193 678.3 940 48.6
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 8.7e-190 668.3 933 47.5
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-188 663.7 851 49.2
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-187 660.6 949 47.0
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.4e-187 660.2 951 47.0
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-186 657.1 848 48.7
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-186 657.1 848 48.7
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 1.3e-185 654.4 944 48.0
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 6.4e-185 652.1 943 47.9
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 5.4e-184 649.0 938 47.4
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-183 646.7 946 46.6
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.9e-181 640.6 941 44.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 2.5e-181 640.2 944 45.2
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 3.3e-181 639.8 895 48.5
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.3e-181 639.4 939 46.5
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 7.4e-181 638.6 886 49.2
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.3e-180 637.9 923 48.5
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.1e-180 637.1 911 47.1
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.7e-180 636.3 939 46.6
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.4e-179 633.6 913 47.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.7e-177 627.5 916 47.6
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.9e-177 626.7 931 47.5
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.9e-176 624.0 878 45.3
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.2e-176 623.2 930 47.4
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 2.5e-173 613.6 918 45.4
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 5.6e-173 612.5 910 45.3
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 9.6e-173 611.7 910 45.1
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.1e-172 610.5 878 46.7
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.8e-172 610.1 903 45.7
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 6.2e-172 609.0 932 45.2
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.2e-169 600.5 642 57.5
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.9e-169 599.4 774 49.9
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.7e-167 593.6 910 44.7
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 7.9e-167 592.0 951 44.9
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.1e-165 588.2 881 46.2
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.7e-164 583.2 929 44.5
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.8e-163 580.9 920 42.5
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 9.0e-163 578.6 842 44.9
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.5e-162 576.2 926 46.5
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.3e-161 574.7 942 45.5
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.2e-161 573.9 924 44.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.4e-160 571.2 857 45.6
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.9e-160 570.9 858 45.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.2e-160 570.1 949 43.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.2e-160 569.7 842 44.4
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 6.1e-159 565.8 923 44.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.8e-158 564.3 992 42.6
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.3e-158 563.9 918 46.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 5.1e-158 562.8 909 44.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.4e-155 553.9 997 41.3
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.9e-155 552.4 901 44.1
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.0e-153 548.5 668 52.2
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.9e-153 547.0 855 46.4
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.6e-151 541.2 898 44.7
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.6e-151 541.2 888 43.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.0e-150 538.5 877 43.2
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.8e-150 537.7 928 41.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.8e-150 537.7 904 44.5
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.7e-150 535.8 901 44.3
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 4.4e-149 533.1 832 47.1
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 4.4e-149 533.1 906 42.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 4.8e-148 529.6 830 46.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.8e-148 529.6 903 45.4
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.1e-147 528.5 847 43.8
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 4.5e-146 523.1 910 43.6
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.0e-145 521.9 828 44.4
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.2e-144 516.9 893 42.4
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 4.2e-144 516.5 854 43.9
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 9.4e-144 515.4 866 42.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.0e-141 507.7 873 43.9
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.7e-141 505.4 644 50.3
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 8.2e-140 502.3 909 40.2
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.4e-139 501.5 866 41.6
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 1.8e-139 501.1 893 42.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-138 498.4 899 43.5
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.2e-138 498.4 596 54.0
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 2.0e-138 497.7 892 43.3
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.5e-138 496.5 832 44.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-136 491.9 866 43.4
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 5.5e-136 489.6 902 43.6
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.7e-135 487.3 949 42.9
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.7e-135 487.3 949 42.9
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 6.1e-135 486.1 925 42.9
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 8.0e-135 485.7 894 42.4
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.0e-134 485.3 895 42.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-134 483.8 927 39.3
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 5.2e-134 483.0 894 42.6
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 6.7e-134 482.6 940 40.6
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 8.8e-134 482.3 923 42.5
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 2.2e-132 477.6 827 44.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.8e-129 466.8 891 40.1
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 4.0e-126 456.8 911 38.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 8.8e-126 455.7 689 46.0
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.2e-125 455.3 912 38.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.1e-123 448.7 693 45.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 4.5e-122 443.4 824 39.6
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.1e-115 420.2 636 47.3
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.8e-113 413.7 746 42.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.1e-107 395.6 496 49.6
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.1e-107 395.6 806 37.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.3e-104 383.6 697 42.3
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 7.5e-101 372.9 444 52.7
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.1e-99 369.0 793 39.3
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.1e-98 364.8 1023 34.2
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.3e-96 357.1 843 36.7
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 8.9e-94 349.4 547 47.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.1e-87 328.2 519 41.6
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.9e-83 315.1 998 34.2
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.0e-78 297.4 434 46.5
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.2e-75 287.3 814 31.2
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.9e-73 280.8 717 31.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-70 272.7 470 46.4
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.1e-70 271.2 716 32.8
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.4e-69 267.7 770 33.2
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 4.9e-68 263.8 286 52.4
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-63 249.2 334 47.0
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.3e-63 249.2 433 44.8
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.8e-63 248.1 692 35.5
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.8e-62 245.4 376 43.9
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.2e-50 206.1 389 40.9
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 2.4e-46 191.8 223 52.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.7e-42 178.3 317 45.4
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.3e-40 171.0 574 32.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-39 169.5 345 40.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.1e-38 166.4 343 33.2
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 9.1e-38 163.3 271 45.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.4e-35 156.0 111 64.9
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.7e-31 141.4 267 40.8
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-30 139.8 275 37.8
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.5e-28 130.2 186 41.9
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-27 127.9 262 44.3
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 7.0e-22 110.5 149 45.6
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.2e-21 109.8 100 55.0
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.7e-18 98.6 149 40.9
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-13 83.2 117 44.4
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.3e-12 79.7 111 40.5
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.1e-11 76.6 305 26.9
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 5.5e-11 74.3 56 64.3
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 3.6e-10 71.6 74 67.6
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.0e-08 65.9 135 34.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.2e-07 62.4 144 32.6
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.3e-07 60.8 158 32.9


User provided reference genes

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