Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 5.5e-242 840.5 408 100.0
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.5e-239 831.6 408 98.8
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.4e-223 776.9 406 91.6
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.9e-219 765.0 409 90.2
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-218 763.1 449 82.9
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.0e-216 755.0 406 88.4
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.3e-214 749.6 406 88.4
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.7e-214 748.0 407 88.5
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 4.1e-213 744.6 406 87.7
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 5.3e-213 744.2 407 86.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 9.1e-213 743.4 406 87.2
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 87.2
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 86.9
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.0e-211 740.0 408 86.5
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.1e-210 736.5 406 86.7
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.1e-210 736.5 406 85.5
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 1.5e-210 736.1 406 85.7
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 1.9e-210 735.7 407 86.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.2e-210 734.9 406 85.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 5.5e-210 734.2 408 86.5
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 5.5e-210 734.2 407 84.8
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 7.2e-210 733.8 408 85.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 7.2e-210 733.8 408 85.5
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 7.2e-210 733.8 404 86.1
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 9.4e-210 733.4 406 85.2
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 9.4e-210 733.4 406 85.0
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 1.2e-209 733.0 408 86.0
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.2e-209 733.0 403 85.4
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.2e-209 733.0 408 86.0
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.2e-209 733.0 408 85.5
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.6e-209 732.6 408 86.3
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 4.7e-209 731.1 406 84.5
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 8.0e-209 730.3 406 85.0
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 8.0e-209 730.3 408 85.5
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.4e-208 729.6 406 85.5
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.4e-208 729.6 406 84.2
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.3e-208 728.8 408 85.0
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 85.1
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 4.0e-208 728.0 408 85.5
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.0e-208 728.0 408 85.5
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 5.2e-208 727.6 408 84.3
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 5.2e-208 727.6 406 84.0
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 5.2e-208 727.6 406 86.2
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 5.2e-208 727.6 406 85.5
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 8.8e-208 726.9 408 85.3
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 8.8e-208 726.9 408 84.6
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.2e-207 726.5 408 85.3
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.2e-207 726.5 406 84.2
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.2e-207 726.5 409 85.8
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.5e-207 726.1 408 85.5
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.0e-207 725.7 406 85.5
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.4e-207 724.9 408 84.1
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 3.4e-207 724.9 406 84.7
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.4e-207 724.5 408 85.0
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 9.8e-207 723.4 406 84.5
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.7e-206 722.6 406 84.0
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.7e-206 722.6 407 83.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.2e-206 722.2 409 85.1
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.2e-206 722.2 408 83.8
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.2e-206 722.2 406 83.7
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.8e-206 721.8 409 84.8
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.7e-206 721.5 406 83.5
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 3.7e-206 721.5 406 84.5
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 4.8e-206 721.1 409 84.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 4.8e-206 721.1 408 83.8
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 4.8e-206 721.1 408 83.3
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 8.3e-206 720.3 409 84.6
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 8.3e-206 720.3 409 84.6
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 8.3e-206 720.3 409 84.4
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 8.3e-206 720.3 408 83.8
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 8.3e-206 720.3 408 84.6
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.1e-205 719.9 421 83.4
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.1e-205 719.9 408 83.8
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.8e-205 719.2 409 84.6
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 3.1e-205 718.4 409 84.8
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 5.4e-205 717.6 408 82.8
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 7.0e-205 717.2 406 83.7
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 7.0e-205 717.2 409 84.6
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.2e-204 716.5 406 83.5
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.2e-204 716.5 405 84.0
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.2e-204 716.5 409 84.4
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.6e-204 716.1 409 84.6
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.6e-204 716.1 409 84.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.0e-204 715.7 406 83.7
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.7e-204 715.3 406 83.3
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 5.9e-204 714.1 406 83.5
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 7.7e-204 713.8 408 82.6
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 7.7e-204 713.8 406 83.5
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.0e-203 713.4 409 83.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.0e-203 713.4 408 83.6
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.3e-203 712.2 422 82.9
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 2.9e-203 711.8 407 81.8
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 5.0e-203 711.1 406 83.0
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 5.0e-203 711.1 407 81.8
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 8.6e-203 710.3 410 84.4
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 8.6e-203 710.3 408 82.4
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 8.6e-203 710.3 409 82.6
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.1e-202 709.9 450 76.4
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 3.3e-202 708.4 408 81.9
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 5.5e-202 707.6 410 83.7
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 5.5e-202 707.6 410 83.7
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 7.2e-202 707.2 409 82.2
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.6e-201 706.1 410 81.5
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.6e-201 706.1 408 82.4
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.1e-201 705.7 452 77.7
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.0e-200 703.4 408 81.9
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.8e-200 702.6 398 83.7
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.5e-199 699.5 410 81.5
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.7e-198 696.0 433 78.5
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.4e-197 692.2 473 73.8
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 5.9e-196 687.6 385 85.7
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.3e-195 686.4 379 85.5
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.6e-193 679.5 387 83.7
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.6e-193 679.5 382 84.3
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 2.1e-193 679.1 417 78.7
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 8.9e-192 673.7 517 67.1
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.2e-190 669.1 410 80.7
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 3.2e-189 665.2 358 88.0
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 9.2e-189 663.7 410 76.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 7.3e-186 654.1 356 87.4
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 5.8e-183 644.4 379 80.2
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 7.5e-183 644.0 409 74.6
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.7e-182 642.9 379 79.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 8.3e-182 640.6 358 85.8
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 4.3e-178 628.2 408 75.5
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.5e-175 617.5 412 72.1
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.4e-173 612.5 410 71.7
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.2e-172 610.1 372 78.5
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 5.1e-171 604.7 405 70.6
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.3e-162 575.5 317 84.9
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 4.7e-161 571.6 376 72.6
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.1e-153 544.3 409 68.5
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.9e-149 533.1 389 68.1
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 3.4e-143 512.3 399 63.9
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.5e-141 505.0 337 73.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.0e-136 488.8 329 74.5
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 8.5e-126 454.5 368 62.0
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.2e-125 452.6 385 58.2
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 7.2e-125 451.4 245 88.2
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 8.2e-121 438.0 255 81.2
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.5e-109 399.8 238 79.4
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 3.6e-108 396.0 227 81.1
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.7e-102 377.1 239 76.6
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 6.5e-94 348.6 197 85.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 8.6e-78 295.0 404 43.6
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 4.9e-73 279.3 390 42.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 5.0e-70 269.2 180 75.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 3.4e-66 256.5 180 68.9
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.2e-63 248.1 141 83.7
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.1e-63 247.3 140 84.3
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.3e-54 217.2 130 77.7
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.1e-47 194.1 104 90.4
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 5.3e-19 99.8 58 70.7
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.2e-15 88.6 128 42.2
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 1.7e-09 68.2 327 23.5


User provided reference genes

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