Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.2e-223 779.6 429 100.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.9e-192 676.0 432 88.9
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.5e-165 586.6 420 81.0
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 8.2e-156 554.3 435 75.2
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.9e-144 516.5 432 71.3
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.2e-138 497.3 444 62.8
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.7e-138 496.1 437 63.2
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 3.5e-138 495.7 437 62.9
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.5e-138 495.7 437 62.9
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 5.9e-138 495.0 437 62.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.0e-137 494.2 472 59.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-137 493.8 437 62.7
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 3.9e-137 492.3 447 63.1
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.9e-137 492.3 437 62.9
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 3.9e-137 492.3 437 62.5
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 6.6e-137 491.5 444 62.6
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 4.3e-136 488.8 437 62.2
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.6e-135 486.9 444 65.1
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 6.1e-135 485.0 447 64.4
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 6.8e-134 481.5 449 64.6
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 1.5e-133 480.3 441 60.5
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 2.6e-133 479.6 446 65.2
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.6e-133 479.6 459 63.8
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 9.8e-133 477.6 442 65.8
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 3.7e-132 475.7 437 61.6
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.9e-132 475.3 442 65.6
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 8.3e-132 474.6 443 62.5
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 1.1e-131 474.2 442 60.2
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.1e-131 474.2 435 62.5
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 2.4e-131 473.0 438 61.9
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.4e-131 471.9 437 64.8
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.4e-131 471.9 437 64.8
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 7.0e-131 471.5 447 60.4
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 9.2e-131 471.1 447 60.0
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.6e-130 470.3 455 64.2
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 4.6e-130 468.8 454 59.3
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 4.6e-130 468.8 442 59.0
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.3e-129 467.2 488 56.4
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.7e-129 466.8 432 62.3
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 3.0e-129 466.1 437 65.7
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 3.0e-129 466.1 441 60.3
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 3.9e-129 465.7 447 59.1
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.9e-129 465.7 451 64.3
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.0e-129 465.3 440 64.3
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.5e-128 463.8 450 62.9
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.5e-128 463.0 439 59.9
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.6e-128 461.8 435 60.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.6e-128 461.8 426 61.0
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 7.3e-128 461.5 443 58.9
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.2e-127 460.7 437 58.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 1.2e-127 460.7 444 64.2
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.6e-127 460.3 448 60.7
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 2.1e-127 459.9 449 63.7
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-127 459.9 448 62.9
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 2.8e-127 459.5 442 59.0
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 6.2e-127 458.4 442 64.3
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.1e-126 457.6 434 58.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.1e-126 457.6 447 58.2
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.8e-126 456.8 445 58.9
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.8e-126 456.8 435 59.3
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 3.1e-126 456.1 435 63.7
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 6.8e-126 454.9 449 59.2
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 8.9e-126 454.5 452 57.1
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 8.9e-126 454.5 439 59.2
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 2.0e-125 453.4 441 58.3
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 2.6e-125 453.0 442 57.0
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 3.4e-125 452.6 442 60.0
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 4.4e-125 452.2 440 59.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 4.4e-125 452.2 458 58.3
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.4e-125 452.2 435 61.8
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 5.8e-125 451.8 450 58.4
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 6.4e-124 448.4 449 58.1
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 6.4e-124 448.4 441 58.0
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.1e-123 447.6 441 57.4
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 1.4e-123 447.2 452 56.4
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.9e-123 446.8 450 57.3
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.2e-123 446.0 438 62.3
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.7e-122 443.0 440 58.9
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 6.0e-122 441.8 452 56.4
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 1.7e-121 440.3 432 58.3
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.3e-121 439.9 457 55.4
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 3.0e-121 439.5 432 58.1
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.6e-121 438.3 436 58.7
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 1.5e-120 437.2 432 60.2
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 2.5e-120 436.4 425 57.4
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 3.3e-120 436.0 438 61.6
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.3e-120 434.9 439 58.3
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 9.5e-120 434.5 486 53.3
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 2.3e-118 429.9 462 61.3
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 3.1e-118 429.5 455 55.6
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 5.2e-118 428.7 455 55.6
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 8.9e-118 427.9 460 55.4
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 1.2e-117 427.6 462 55.4
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 5.8e-117 425.2 473 53.7
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.7e-116 423.7 495 51.5
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.1e-115 421.0 427 61.4
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.4e-115 420.6 460 54.6
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.4e-115 419.9 429 62.0
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.1e-115 419.1 435 60.9
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.2e-114 417.5 440 59.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.1e-114 416.8 445 56.0
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.1e-113 412.1 442 57.9
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 3.1e-110 402.9 444 58.3
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 6.8e-110 401.7 445 57.8
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.9e-108 396.4 434 59.7
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.1e-105 385.6 437 53.1
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.9e-104 383.6 441 58.0
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 2.3e-97 360.1 445 52.8
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.4e-94 350.9 435 55.9
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 2.6e-93 346.7 435 52.2
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 4.5e-93 345.9 470 48.1
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 3.2e-91 339.7 316 58.2
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.2e-90 337.8 387 51.2
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.3e-89 334.3 382 53.1
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.9e-88 330.5 306 67.3
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.3e-87 327.8 378 57.4
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.3e-86 322.4 474 48.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.5e-85 319.3 374 56.4
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 7.4e-80 302.0 421 49.2
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 5.3e-78 295.8 378 47.6
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.9e-75 287.3 434 44.2
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.9e-65 253.1 306 51.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.2e-58 231.5 142 81.0
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.2e-58 231.5 219 58.4
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 7.9e-58 228.8 283 49.8
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.8e-55 220.3 440 39.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.1e-54 216.9 440 39.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.7e-50 203.8 136 75.7
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 2.2e-44 184.1 259 42.9
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 2.2e-44 184.1 259 42.9
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.6e-42 177.9 322 39.1
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.4e-38 164.9 350 36.0
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 3.8e-36 156.8 130 60.8
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 2.3e-33 147.5 74 93.2
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.0e-33 147.1 185 50.3
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.0e-28 132.1 82 81.7
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.9e-27 127.9 69 87.0
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 7.2e-27 125.9 277 37.9
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.6e-26 124.8 69 87.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 8.0e-26 122.5 257 38.9
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 1.4e-25 121.7 68 82.4
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.8e-25 121.3 178 44.4
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 6.3e-23 112.8 81 71.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 5.4e-22 109.8 67 79.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 5.9e-21 106.3 115 51.3
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.9e-20 104.0 137 48.9
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.1e-19 102.1 58 84.5
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.1e-19 102.1 58 84.5
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 2.4e-14 84.3 483 28.0
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.0e-13 81.3 62 67.7
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 1.0e-12 79.0 91 51.6
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 2.9e-07 60.8 69 50.7
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 1.9e-06 58.2 89 40.4
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 4.1e-06 57.0 130 37.7
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 9.2e-06 55.8 109 34.9


User provided reference genes

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