Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 2.5e-58 228.4 104 100.0
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 7.3e-58 226.9 104 99.0
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 3.8e-54 214.5 104 91.3
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 5.1e-51 204.1 104 85.6
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 8.7e-51 203.4 104 84.6
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 3.3e-50 201.4 104 84.6
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 3.3e-50 201.4 104 82.7
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 5.6e-50 200.7 104 84.6
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 9.6e-50 199.9 103 83.5
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 9.6e-50 199.9 104 81.7
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 9.6e-50 199.9 104 81.7
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.3e-49 199.5 104 83.7
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.6e-49 199.1 104 82.7
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.6e-49 199.1 104 83.7
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.6e-49 199.1 104 82.7
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.1e-49 198.7 104 83.7
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 2.1e-49 198.7 104 83.7
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.8e-49 198.4 104 81.7
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 2.8e-49 198.4 104 83.7
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 2.8e-49 198.4 104 82.7
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 2.8e-49 198.4 104 83.7
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 3.6e-49 198.0 104 83.7
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 3.6e-49 198.0 104 83.7
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.6e-49 198.0 103 83.5
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.6e-49 198.0 103 83.5
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 4.8e-49 197.6 104 83.7
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.8e-49 197.6 104 81.7
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 4.8e-49 197.6 100 86.0
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 4.8e-49 197.6 112 80.4
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 4.8e-49 197.6 104 82.7
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 4.8e-49 197.6 104 82.7
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 81.7
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 81.7
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 80.8
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 82.7
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 6.2e-49 197.2 104 82.7
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 8.1e-49 196.8 104 82.7
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 8.1e-49 196.8 104 82.7
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 8.1e-49 196.8 104 82.7
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 8.1e-49 196.8 104 82.7
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 8.1e-49 196.8 104 82.7
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 8.1e-49 196.8 103 81.6
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.1e-48 196.4 104 81.7
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.1e-48 196.4 103 82.5
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.4e-48 196.1 104 81.7
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.4e-48 196.1 104 82.7
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.4e-48 196.1 104 82.7
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 81.7
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 82.7
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 82.7
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 82.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.8e-48 195.7 104 82.7
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 81.7
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 81.7
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 80.8
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 79.8
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 79.8
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.4e-48 195.3 104 81.7
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 81.7
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 79.8
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 3.1e-48 194.9 104 80.8
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 4.0e-48 194.5 104 81.7
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 4.0e-48 194.5 104 80.8
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 4.0e-48 194.5 104 80.8
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 5.3e-48 194.1 104 79.8
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 5.3e-48 194.1 104 80.8
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 5.3e-48 194.1 100 85.0
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 80.8
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 6.9e-48 193.7 106 81.1
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 80.8
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 80.8
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 6.9e-48 193.7 104 81.7
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 80.8
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 80.8
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 79.8
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 9.0e-48 193.4 104 79.8
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 80.8
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 80.8
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.2e-47 193.0 104 81.7
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.5e-47 192.6 104 80.8
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.5e-47 192.6 104 80.8
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 1.5e-47 192.6 104 78.8
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 2.6e-47 191.8 104 78.8
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 2.6e-47 191.8 104 78.8
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 3.4e-47 191.4 101 80.2
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 7.6e-47 190.3 104 77.9
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 2.2e-46 188.7 104 78.8
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 2.2e-46 188.7 104 76.9
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 2.9e-46 188.3 102 77.5
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 8.4e-46 186.8 104 76.9
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 1.1e-45 186.4 97 81.4
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 1.4e-45 186.0 104 76.0
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 4.2e-45 184.5 105 78.1
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 9.3e-45 183.3 123 68.3
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 1.6e-44 182.6 91 87.9
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 4.6e-44 181.0 104 74.0
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 6.0e-44 180.6 93 83.9
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 1.0e-43 179.9 89 86.5
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.3e-43 179.5 95 80.0
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 1.7e-43 179.1 89 85.4
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-43 178.7 95 80.0
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.3e-43 178.7 95 80.0
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.6e-43 177.2 133 62.4
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.6e-43 177.2 133 62.4
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 8.7e-43 176.8 89 84.3
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 8.7e-43 176.8 89 84.3
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 8.7e-43 176.8 140 60.7
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 1.1e-42 176.4 89 83.1
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 1.1e-42 176.4 103 71.8
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 1.5e-42 176.0 91 82.4
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.9e-42 175.6 129 66.7
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 2.5e-42 175.3 90 83.3
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 2.5e-42 175.3 103 72.8
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 1.4e-40 169.5 91 79.1
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 5.1e-35 151.0 78 79.5
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.1e-34 149.8 104 71.2
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.9e-34 149.1 109 67.9
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 5.6e-34 147.5 107 66.4
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 8.1e-33 143.7 104 64.4
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.4e-32 142.9 111 63.1
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.2e-30 135.6 69 84.1
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 1.1e-29 133.3 69 82.6
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 4.2e-29 131.3 68 80.9
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 7.1e-29 130.6 69 79.7
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.8e-27 125.9 104 59.6
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.9e-27 124.8 69 79.7
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 2.1e-25 119.0 61 82.0
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.3e-22 109.8 64 71.9
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.1e-20 102.4 58 75.9
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.2e-17 92.4 43 83.7
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 6.3e-17 90.9 61 60.7
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.6e-15 85.5 44 84.1
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 5.5e-13 77.8 45 71.1
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.6e-12 75.1 47 63.8
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.0e-11 73.6 42 78.6
CSS0020716 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 8.2e-09 63.9 35 65.7
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.6e-07 58.9 49 55.1
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.0e-06 57.0 31 83.9


User provided reference genes

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